Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 AC093677.2-201ENST00000600169 1863 ntBASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 AL592071.1-201ENST00000611956 408 ntBASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
PTCHD1Q96NR3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 RN7SL606P-201ENST00000472779 293 ntBASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD1Q96NR3 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 LINC00167-201ENST00000530583 1419 ntBASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD1Q96NR3 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 AL096828.2-201ENST00000567259 1965 ntBASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 MIR3180-1-201ENST00000580374 94 ntBASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 MIR3180-3-201ENST00000584616 94 ntBASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.95■□□□□ 0.3
PTCHD1Q96NR3 AC009154.2-201ENST00000621177 724 ntBASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms