Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 PTMS-205ENST00000540828 644 ntTSL 1 (best)30.06■■■□□ 2.42e-9■■□□□ 13.8
UPF1Q92900 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.052e-9■■□□□ 13.8
UPF1Q92900 PTMS-202ENST00000389462 773 ntTSL 2 BASIC24.9■■□□□ 1.582e-9■■□□□ 13.8
UPF1Q92900 PTMS-204ENST00000540667 820 ntTSL 222.42■■□□□ 1.182e-9■■□□□ 13.8
UPF1Q92900 SLC48A1-202ENST00000442892 1024 ntTSL 1 (best) BASIC16.59■□□□□ 0.254e-7■■□□□ 13.8
UPF1Q92900 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.174e-7■■□□□ 13.8
UPF1Q92900 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.391e-10■■□□□ 13.8
UPF1Q92900 TMEM120B-202ENST00000411958 441 ntTSL 523■■□□□ 1.277e-7■■□□□ 13.8
UPF1Q92900 RHOC-212ENST00000468093 1042 ntTSL 320.41■□□□□ 0.861e-10■■□□□ 13.8
UPF1Q92900 TMEM120B-205ENST00000538055 2444 ntTSL 219.38■□□□□ 0.691e-6■■□□□ 13.8
UPF1Q92900 RHOC-205ENST00000369636 786 ntTSL 2 BASIC18.55■□□□□ 0.561e-10■■□□□ 13.8
UPF1Q92900 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.561e-10■■□□□ 13.8
UPF1Q92900 RHOC-213ENST00000473074 943 ntTSL 518.4■□□□□ 0.541e-10■■□□□ 13.8
UPF1Q92900 TMEM120B-203ENST00000416147 532 ntTSL 417.4■□□□□ 0.381e-6■■□□□ 13.8
UPF1Q92900 AL049840.3-201ENST00000602669 611 ntBASIC25.24■■□□□ 1.638e-9■■□□□ 13.8
UPF1Q92900 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.058e-9■■□□□ 13.8
UPF1Q92900 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.71□□□□□ -0.218e-9■■□□□ 13.8
UPF1Q92900 MGAT1-214ENST00000507384 572 ntTSL 432.63■■■□□ 2.812e-10■■□□□ 13.8
UPF1Q92900 MGAT1-223ENST00000514283 619 ntTSL 228.9■■■□□ 2.222e-10■■□□□ 13.8
UPF1Q92900 PYCR1-209ENST00000579698 572 ntTSL 426.98■■□□□ 1.912e-10■■□□□ 13.8
UPF1Q92900 MGAT1-206ENST00000502678 693 ntTSL 425.48■■□□□ 1.672e-10■■□□□ 13.8
UPF1Q92900 MGAT1-208ENST00000504671 878 ntTSL 323.74■■□□□ 1.392e-10■■□□□ 13.8
UPF1Q92900 MGAT1-220ENST00000512695 549 ntTSL 423.74■■□□□ 1.392e-10■■□□□ 13.8
UPF1Q92900 MGAT1-211ENST00000506269 564 ntTSL 422.25■■□□□ 1.152e-10■■□□□ 13.8
UPF1Q92900 PYCR1-208ENST00000579366 681 ntTSL 317.3■□□□□ 0.362e-10■■□□□ 13.8
UPF1Q92900 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.337e-7■■□□□ 13.8
UPF1Q92900 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.217e-7■■□□□ 13.8
UPF1Q92900 VGLL4-201ENST00000273038 3725 ntTSL 1 (best) BASIC12.6□□□□□ -0.392e-6■■□□□ 13.7
UPF1Q92900 YWHAZ-216ENST00000521309 1399 ntTSL 2 BASIC16.22■□□□□ 0.195e-13■■□□□ 13.7
UPF1Q92900 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC9.88□□□□□ -0.835e-13■■□□□ 13.7
UPF1Q92900 RBMX-206ENST00000561733 837 ntTSL 315.66■□□□□ 0.16e-12■■□□□ 13.7
UPF1Q92900 RBMX-212ENST00000568578 4887 ntTSL 1 (best)9.51□□□□□ -0.896e-12■■□□□ 13.7
UPF1Q92900 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC8.37□□□□□ -1.076e-12■■□□□ 13.7
UPF1Q92900 RBMX-205ENST00000496459 2041 ntTSL 27.88□□□□□ -1.156e-12■■□□□ 13.7
UPF1Q92900 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.073e-6■■□□□ 13.7
UPF1Q92900 WDTC1-204ENST00000472249 628 ntTSL 521.87■■□□□ 1.097e-7■■□□□ 13.7
UPF1Q92900 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.782e-10■■□□□ 13.7
UPF1Q92900 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.4■■□□□ 1.984e-7■■□□□ 13.7
UPF1Q92900 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.054e-6■■□□□ 13.7
UPF1Q92900 FOSL2-202ENST00000379619 5829 ntTSL 1 (best) BASIC11.84□□□□□ -0.514e-6■■□□□ 13.7
UPF1Q92900 PHC2-212ENST00000493483 760 ntTSL 332.3■■■□□ 2.762e-6■■□□□ 13.7
UPF1Q92900 RBM38-205ENST00000440234 686 ntTSL 2 BASIC32.24■■■□□ 2.753e-6■■□□□ 13.7
UPF1Q92900 AKT1-217ENST00000557494 408 ntTSL 231.23■■■□□ 2.592e-6■■□□□ 13.7
UPF1Q92900 SSNA1-202ENST00000459860 1170 ntTSL 1 (best)31.07■■■□□ 2.562e-6■■□□□ 13.7
UPF1Q92900 OGFOD3-208ENST00000580445 1274 ntTSL 1 (best)30.86■■■□□ 2.532e-6■■□□□ 13.7
UPF1Q92900 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.472e-6■■□□□ 13.7
UPF1Q92900 RBM38-201ENST00000342690 852 ntTSL 329.33■■■□□ 2.293e-6■■□□□ 13.7
UPF1Q92900 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC25.96■■□□□ 1.752e-6■■□□□ 13.7
UPF1Q92900 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC22.85■■□□□ 1.252e-6■■□□□ 13.7
UPF1Q92900 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.232e-7■■□□□ 13.7
UPF1Q92900 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC11.26□□□□□ -0.613e-12■■□□□ 13.7
UPF1Q92900 PREPL-213ENST00000444696 583 ntTSL 49.91□□□□□ -0.823e-12■■□□□ 13.7
UPF1Q92900 PREPL-208ENST00000410081 3080 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.863e-12■■□□□ 13.7
UPF1Q92900 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.921e-8■■□□□ 13.7
UPF1Q92900 PREPL-202ENST00000378511 2315 ntTSL 1 (best) BASIC9.11□□□□□ -0.953e-12■■□□□ 13.7
UPF1Q92900 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC7.32□□□□□ -1.243e-12■■□□□ 13.7
UPF1Q92900 NSF-206ENST00000575068 2667 ntTSL 2 BASIC7.23□□□□□ -1.252e-6■■□□□ 13.7
UPF1Q92900 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.79□□□□□ -1.322e-7■■□□□ 13.7
UPF1Q92900 PREPL-210ENST00000425263 5657 ntTSL 1 (best)5.46□□□□□ -1.533e-12■■□□□ 13.7
UPF1Q92900 PREPL-211ENST00000426481 6273 ntTSL 1 (best)5.1□□□□□ -1.593e-12■■□□□ 13.7
UPF1Q92900 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.723e-12■■□□□ 13.7
UPF1Q92900 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.21□□□□□ -1.743e-12■■□□□ 13.7
UPF1Q92900 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.86□□□□□ -1.793e-12■■□□□ 13.7
UPF1Q92900 AC010636.2-201ENST00000595094 522 ntTSL 5 BASIC14.94□□□□□ -0.025e-7■■□□□ 13.7
UPF1Q92900 ZNF626-202ENST00000595405 501 ntTSL 312.49□□□□□ -0.415e-7■■□□□ 13.7
UPF1Q92900 ZNF626-203ENST00000601440 5963 ntTSL 4 BASIC9.56□□□□□ -0.885e-7■■□□□ 13.7
UPF1Q92900 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.755e-7■■□□□ 13.7
UPF1Q92900 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.139e-11■■□□□ 13.7
UPF1Q92900 NUMB-202ENST00000356296 3453 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.549e-11■■□□□ 13.7
UPF1Q92900 NUMB-212ENST00000554546 3607 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.659e-11■■□□□ 13.7
UPF1Q92900 NUMB-205ENST00000544991 2757 ntTSL 5 BASIC9.55□□□□□ -0.889e-11■■□□□ 13.7
UPF1Q92900 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.949e-11■■□□□ 13.7
UPF1Q92900 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.999e-11■■□□□ 13.7
UPF1Q92900 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC8.37□□□□□ -1.079e-11■■□□□ 13.7
UPF1Q92900 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC8.01□□□□□ -1.139e-11■■□□□ 13.7
UPF1Q92900 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.83□□□□□ -1.329e-11■■□□□ 13.7
UPF1Q92900 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.66□□□□□ -1.349e-11■■□□□ 13.7
UPF1Q92900 BAIAP2-210ENST00000572498 858 ntTSL 221.76■■□□□ 1.071e-7■■□□□ 13.7
UPF1Q92900 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.681e-7■■□□□ 13.7
UPF1Q92900 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.81■□□□□ 0.61e-7■■□□□ 13.7
UPF1Q92900 BAIAP2-225ENST00000576225 2316 ntTSL 218.8■□□□□ 0.61e-7■■□□□ 13.7
UPF1Q92900 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.481e-7■■□□□ 13.7
UPF1Q92900 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.151e-7■■□□□ 13.7
UPF1Q92900 DDX52-213ENST00000617633 6362 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.677e-9■■□□□ 13.7
UPF1Q92900 DDX52-212ENST00000616646 2951 ntTSL 58.61□□□□□ -1.037e-9■■□□□ 13.7
UPF1Q92900 DDX52-215ENST00000620209 3123 ntTSL 27.37□□□□□ -1.237e-9■■□□□ 13.7
UPF1Q92900 DDX52-211ENST00000614307 3550 ntTSL 27.18□□□□□ -1.267e-9■■□□□ 13.7
UPF1Q92900 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.161e-7■■□□□ 13.7
UPF1Q92900 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.011e-7■■□□□ 13.7
UPF1Q92900 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.151e-7■■□□□ 13.7
UPF1Q92900 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC13.05□□□□□ -0.321e-7■■□□□ 13.7
UPF1Q92900 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.198e-8■■□□□ 13.6
UPF1Q92900 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.238e-8■■□□□ 13.6
UPF1Q92900 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.358e-8■■□□□ 13.6
UPF1Q92900 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.328e-8■■□□□ 13.6
UPF1Q92900 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.768e-8■■□□□ 13.6
UPF1Q92900 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC22.5■■□□□ 1.194e-7■■□□□ 13.6
UPF1Q92900 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.45■□□□□ 0.864e-7■■□□□ 13.6
UPF1Q92900 SCMH1-203ENST00000361191 2906 ntTSL 5 BASIC11.78□□□□□ -0.524e-7■■□□□ 13.6
UPF1Q92900 SCMH1-202ENST00000337495 3108 ntTSL 2 BASIC11.44□□□□□ -0.584e-7■■□□□ 13.6
Retrieved 100 of 15,879 protein–RNA pairs in 112.3 ms