Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 AC027682.1-201ENST00000562846 899 ntBASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLRN3Q8NCR9 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 AL096828.2-201ENST00000567259 1965 ntBASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 HEIH-201ENST00000623091 1652 ntBASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 AC008556.1-201ENST00000610908 2040 ntBASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 AC110285.6-201ENST00000617652 491 ntBASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 MPST-208ENST00000628507 698 ntTSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLRN3Q8NCR9 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 CDV3P1-201ENST00000471403 739 ntBASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms