Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC104819.1-201ENST00000504587 486 ntBASIC16.65■□□□□ 0.26
RNF4P78317 AC112698.1-201ENST00000510299 916 ntBASIC16.65■□□□□ 0.26
RNF4P78317 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.65■□□□□ 0.26
RNF4P78317 CLEC4GP1-201ENST00000596555 870 ntBASIC16.65■□□□□ 0.26
RNF4P78317 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.65■□□□□ 0.26
RNF4P78317 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 BCL2-203ENST00000589955 5011 ntBASIC16.65■□□□□ 0.26
RNF4P78317 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.65■□□□□ 0.26
RNF4P78317 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
RNF4P78317 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 AC022898.2-201ENST00000616822 1312 ntBASIC16.65■□□□□ 0.26
RNF4P78317 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
RNF4P78317 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
RNF4P78317 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.26
RNF4P78317 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RNF4P78317 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.64■□□□□ 0.25
RNF4P78317 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.64■□□□□ 0.25
RNF4P78317 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.64■□□□□ 0.25
RNF4P78317 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.64■□□□□ 0.25
RNF4P78317 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.64■□□□□ 0.25
RNF4P78317 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.64■□□□□ 0.25
RNF4P78317 AP005901.3-202ENST00000581653 237 ntBASIC16.64■□□□□ 0.25
RNF4P78317 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.64■□□□□ 0.25
RNF4P78317 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.64■□□□□ 0.25
RNF4P78317 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.64■□□□□ 0.25
RNF4P78317 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.64■□□□□ 0.25
RNF4P78317 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.64■□□□□ 0.25
RNF4P78317 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RNF4P78317 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RNF4P78317 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RNF4P78317 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.63■□□□□ 0.25
RNF4P78317 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.63■□□□□ 0.25
RNF4P78317 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
RNF4P78317 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
RNF4P78317 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
RNF4P78317 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RNF4P78317 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
RNF4P78317 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.63■□□□□ 0.25
RNF4P78317 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.63■□□□□ 0.25
RNF4P78317 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.63■□□□□ 0.25
RNF4P78317 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.63■□□□□ 0.25
RNF4P78317 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RNF4P78317 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
RNF4P78317 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RNF4P78317 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
RNF4P78317 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RNF4P78317 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RNF4P78317 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms