Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.69■□□□□ 0.42
PKNOX1P55347 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.69■□□□□ 0.42
PKNOX1P55347 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 TNRC18P3-201ENST00000441896 2691 ntBASIC17.68■□□□□ 0.42
PKNOX1P55347 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 KRT18P55-202ENST00000578578 1546 ntBASIC17.68■□□□□ 0.42
PKNOX1P55347 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PKNOX1P55347 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.68■□□□□ 0.42
PKNOX1P55347 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.68■□□□□ 0.42
PKNOX1P55347 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
PKNOX1P55347 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.68■□□□□ 0.42
PKNOX1P55347 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PKNOX1P55347 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.68■□□□□ 0.42
PKNOX1P55347 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.67■□□□□ 0.42
PKNOX1P55347 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PKNOX1P55347 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.67■□□□□ 0.42
PKNOX1P55347 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.67■□□□□ 0.42
PKNOX1P55347 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
PKNOX1P55347 TSPY14P-201ENST00000303979 915 ntBASIC17.67■□□□□ 0.42
PKNOX1P55347 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PKNOX1P55347 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.67■□□□□ 0.42
PKNOX1P55347 MIR1238-201ENST00000408483 83 ntBASIC17.67■□□□□ 0.42
PKNOX1P55347 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 AL390955.1-201ENST00000428694 934 ntBASIC17.67■□□□□ 0.42
PKNOX1P55347 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.67■□□□□ 0.42
PKNOX1P55347 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.67■□□□□ 0.42
PKNOX1P55347 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PKNOX1P55347 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.67■□□□□ 0.42
PKNOX1P55347 KRT17P2-201ENST00000300992 1314 ntBASIC17.67■□□□□ 0.42
PKNOX1P55347 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PKNOX1P55347 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 AL024508.2-201ENST00000607749 1894 ntBASIC17.67■□□□□ 0.42
PKNOX1P55347 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.67■□□□□ 0.42
PKNOX1P55347 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
PKNOX1P55347 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PKNOX1P55347 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PKNOX1P55347 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PKNOX1P55347 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.66■□□□□ 0.42
PKNOX1P55347 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.66■□□□□ 0.42
PKNOX1P55347 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PKNOX1P55347 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PKNOX1P55347 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.66■□□□□ 0.42
PKNOX1P55347 EGLN1P1-201ENST00000531623 762 ntBASIC17.66■□□□□ 0.42
PKNOX1P55347 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.66■□□□□ 0.42
PKNOX1P55347 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.66■□□□□ 0.42
PKNOX1P55347 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.66■□□□□ 0.42
PKNOX1P55347 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms