Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.63■□□□□ 0.89
SMARCA1P28370 PRELID1P1-202ENST00000567272 903 ntBASIC20.63■□□□□ 0.89
SMARCA1P28370 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.63■□□□□ 0.89
SMARCA1P28370 AC114341.1-201ENST00000618070 349 ntBASIC20.63■□□□□ 0.89
SMARCA1P28370 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.63■□□□□ 0.89
SMARCA1P28370 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
SMARCA1P28370 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SMARCA1P28370 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.63■□□□□ 0.89
SMARCA1P28370 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.63■□□□□ 0.89
SMARCA1P28370 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SMARCA1P28370 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
SMARCA1P28370 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.62■□□□□ 0.89
SMARCA1P28370 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.62■□□□□ 0.89
SMARCA1P28370 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.62■□□□□ 0.89
SMARCA1P28370 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.62■□□□□ 0.89
SMARCA1P28370 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.62■□□□□ 0.89
SMARCA1P28370 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SMARCA1P28370 AC007967.3-201ENST00000434308 558 ntBASIC20.62■□□□□ 0.89
SMARCA1P28370 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.62■□□□□ 0.89
SMARCA1P28370 AC122714.2-201ENST00000502787 707 ntBASIC20.62■□□□□ 0.89
SMARCA1P28370 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.62■□□□□ 0.89
SMARCA1P28370 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.62■□□□□ 0.89
SMARCA1P28370 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 INTS4P1-201ENST00000438455 1935 ntBASIC20.62■□□□□ 0.89
SMARCA1P28370 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMARCA1P28370 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.61■□□□□ 0.89
SMARCA1P28370 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.61■□□□□ 0.89
SMARCA1P28370 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 FOSL1P1-201ENST00000511041 816 ntBASIC20.61■□□□□ 0.89
SMARCA1P28370 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.61■□□□□ 0.89
SMARCA1P28370 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.61■□□□□ 0.89
SMARCA1P28370 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.61■□□□□ 0.89
SMARCA1P28370 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.61■□□□□ 0.89
SMARCA1P28370 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 MIR5100-201ENST00000579544 119 ntBASIC20.61■□□□□ 0.89
SMARCA1P28370 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.61■□□□□ 0.89
SMARCA1P28370 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.61■□□□□ 0.89
SMARCA1P28370 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.61■□□□□ 0.89
SMARCA1P28370 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMARCA1P28370 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.61■□□□□ 0.89
SMARCA1P28370 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.6■□□□□ 0.89
SMARCA1P28370 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.6■□□□□ 0.89
SMARCA1P28370 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
SMARCA1P28370 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SMARCA1P28370 AC010460.3-201ENST00000511359 1579 ntBASIC20.6■□□□□ 0.89
SMARCA1P28370 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 FAM220CP-201ENST00000395253 831 ntBASIC20.6■□□□□ 0.89
SMARCA1P28370 RCN1P2-201ENST00000398357 915 ntBASIC20.6■□□□□ 0.89
SMARCA1P28370 KRT18P31-201ENST00000506277 1292 ntBASIC20.6■□□□□ 0.89
SMARCA1P28370 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.6■□□□□ 0.89
SMARCA1P28370 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SMARCA1P28370 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.6■□□□□ 0.89
SMARCA1P28370 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.6■□□□□ 0.89
SMARCA1P28370 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SMARCA1P28370 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.6■□□□□ 0.89
SMARCA1P28370 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SMARCA1P28370 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMARCA1P28370 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms