Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.8■□□□□ 0.44
COL6A2P12110 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A2P12110 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A2P12110 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.8■□□□□ 0.44
COL6A2P12110 LINC00167-201ENST00000530583 1419 ntBASIC17.8■□□□□ 0.44
COL6A2P12110 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.8■□□□□ 0.44
COL6A2P12110 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A2P12110 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A2P12110 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
COL6A2P12110 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL6A2P12110 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL6A2P12110 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A2P12110 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 AC100803.2-201ENST00000562459 1963 ntBASIC17.79■□□□□ 0.44
COL6A2P12110 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL6A2P12110 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 PVRIG2P-201ENST00000435460 978 ntBASIC17.79■□□□□ 0.44
COL6A2P12110 AC009947.2-201ENST00000444014 672 ntBASIC17.79■□□□□ 0.44
COL6A2P12110 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A2P12110 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A2P12110 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 AC116407.2-201ENST00000613639 860 ntBASIC17.79■□□□□ 0.44
COL6A2P12110 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.79■□□□□ 0.44
COL6A2P12110 TMEM191A-211ENST00000637163 1067 ntBASIC17.79■□□□□ 0.44
COL6A2P12110 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A2P12110 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A2P12110 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.79■□□□□ 0.44
COL6A2P12110 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A2P12110 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A2P12110 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL6A2P12110 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A2P12110 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A2P12110 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A2P12110 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A2P12110 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.78■□□□□ 0.44
COL6A2P12110 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 AC113404.2-201ENST00000507884 177 ntBASIC17.78■□□□□ 0.44
COL6A2P12110 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.78■□□□□ 0.44
COL6A2P12110 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
COL6A2P12110 AL355075.4-201ENST00000554988 638 ntBASIC17.78■□□□□ 0.44
COL6A2P12110 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.78■□□□□ 0.44
COL6A2P12110 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A2P12110 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.78■□□□□ 0.44
COL6A2P12110 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
COL6A2P12110 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
COL6A2P12110 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A2P12110 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A2P12110 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL6A2P12110 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A2P12110 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A2P12110 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A2P12110 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A2P12110 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL6A2P12110 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A2P12110 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL6A2P12110 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL6A2P12110 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A2P12110 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
COL6A2P12110 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A2P12110 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A2P12110 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL6A2P12110 INGX-201ENST00000359239 846 ntBASIC17.77■□□□□ 0.44
COL6A2P12110 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms