Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH4O15457 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
MSH4O15457 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH4O15457 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
MSH4O15457 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH4O15457 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH4O15457 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.19■□□□□ 0.82
MSH4O15457 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH4O15457 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH4O15457 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH4O15457 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.18■□□□□ 0.82
MSH4O15457 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
MSH4O15457 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH4O15457 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH4O15457 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH4O15457 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH4O15457 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.18■□□□□ 0.82
MSH4O15457 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH4O15457 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH4O15457 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.18■□□□□ 0.82
MSH4O15457 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH4O15457 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
MSH4O15457 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 AL390961.4-201ENST00000623958 2535 ntBASIC20.17■□□□□ 0.82
MSH4O15457 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.17■□□□□ 0.82
MSH4O15457 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
MSH4O15457 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.17■□□□□ 0.82
MSH4O15457 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
MSH4O15457 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
MSH4O15457 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
MSH4O15457 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.17■□□□□ 0.82
MSH4O15457 KRT18P31-201ENST00000506277 1292 ntBASIC20.17■□□□□ 0.82
MSH4O15457 UNC93B7-201ENST00000509439 705 ntBASIC20.17■□□□□ 0.82
MSH4O15457 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.17■□□□□ 0.82
MSH4O15457 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.17■□□□□ 0.82
MSH4O15457 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.17■□□□□ 0.82
MSH4O15457 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 TP73-AS1-210ENST00000637775 1455 ntBASIC20.17■□□□□ 0.82
MSH4O15457 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.17■□□□□ 0.82
MSH4O15457 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.17■□□□□ 0.82
MSH4O15457 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.17■□□□□ 0.82
MSH4O15457 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.17■□□□□ 0.82
MSH4O15457 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH4O15457 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
MSH4O15457 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.16■□□□□ 0.82
MSH4O15457 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
MSH4O15457 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 POM121L3P-201ENST00000419331 1163 ntBASIC20.16■□□□□ 0.82
MSH4O15457 AC096633.1-201ENST00000422446 749 ntBASIC20.16■□□□□ 0.82
MSH4O15457 AL450487.1-201ENST00000426799 995 ntBASIC20.16■□□□□ 0.82
MSH4O15457 AC096582.2-201ENST00000510860 516 ntBASIC20.16■□□□□ 0.82
MSH4O15457 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 AC097374.2-201ENST00000618617 1306 ntBASIC20.16■□□□□ 0.82
MSH4O15457 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH4O15457 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.16■□□□□ 0.82
MSH4O15457 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.16■□□□□ 0.82
MSH4O15457 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.16■□□□□ 0.82
MSH4O15457 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
MSH4O15457 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH4O15457 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms