Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4AQ9UN37 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.47■□□□□ 0.39
VPS4AQ9UN37 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 MIR564-202ENST00000385049 94 ntBASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AL023284.2-201ENST00000405850 579 ntBASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 ZNF444P1-201ENST00000559497 298 ntBASIC17.47■□□□□ 0.39
VPS4AQ9UN37 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.47■□□□□ 0.39
VPS4AQ9UN37 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS4AQ9UN37 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 AC112907.2-201ENST00000448639 330 ntBASIC17.46■□□□□ 0.39
VPS4AQ9UN37 CA15P1-201ENST00000481698 905 ntBASIC17.46■□□□□ 0.39
VPS4AQ9UN37 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 AC008764.6-201ENST00000595909 2069 ntBASIC17.46■□□□□ 0.39
VPS4AQ9UN37 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
VPS4AQ9UN37 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS4AQ9UN37 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.46■□□□□ 0.38
VPS4AQ9UN37 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms