Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 FAM87A-204ENST00000613235 858 ntBASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 TMEM191A-211ENST00000637163 1067 ntBASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 KRT17P2-201ENST00000300992 1314 ntBASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATG4AQ8WYN0 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 ECEL1P2-202ENST00000465689 757 ntBASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms