Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 AC120498.9-201ENST00000339021 3867 ntBASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 AC079776.2-201ENST00000641154 1609 ntBASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 PMPCAP1-201ENST00000508114 1576 ntBASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 AL139424.1-201ENST00000607572 797 ntBASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 SP100-208ENST00000427101 1922 ntTSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC23.66■■□□□ 1.38
USHBP1Q8N6Y0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 KRT18P3-201ENST00000451602 1288 ntBASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 AL691403.2-201ENST00000618460 490 ntBASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 CROCCP3-202ENST00000420820 1947 ntBASIC23.65■■□□□ 1.38
USHBP1Q8N6Y0 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC23.64■■□□□ 1.38
USHBP1Q8N6Y0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USHBP1Q8N6Y0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 AC097374.2-201ENST00000618617 1306 ntBASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 AC093010.1-201ENST00000473625 1624 ntBASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.63■■□□□ 1.37
USHBP1Q8N6Y0 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms