Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 AL365209.1-201ENST00000624418 6473 ntBASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 KRT8P17-201ENST00000453110 1448 ntBASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 RBM17P2-201ENST00000616397 1405 ntBASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.08■□□□□ 0.01
CCDC28AQ8IWP9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CCDC28AQ8IWP9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.08■□□□□ 0.01
CCDC28AQ8IWP9 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.08■□□□□ 0.01
CCDC28AQ8IWP9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.08■□□□□ 0.01
CCDC28AQ8IWP9 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CCDC28AQ8IWP9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.08■□□□□ 0.01
CCDC28AQ8IWP9 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 PGM5P4-201ENST00000421970 445 ntBASIC15.08■□□□□ 0
CCDC28AQ8IWP9 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 AC034268.1-201ENST00000441047 882 ntBASIC15.08■□□□□ 0
CCDC28AQ8IWP9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 AL356652.1-201ENST00000615962 565 ntBASIC15.08■□□□□ 0
CCDC28AQ8IWP9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 PAUPAR-201ENST00000630360 2965 ntBASIC15.08■□□□□ 0
CCDC28AQ8IWP9 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CCDC28AQ8IWP9 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 CICP13-201ENST00000422015 2789 ntBASIC15.07■□□□□ 0
CCDC28AQ8IWP9 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 KRT16P6-202ENST00000425692 1426 ntBASIC15.07■□□□□ 0
CCDC28AQ8IWP9 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CCDC28AQ8IWP9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms