Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 AC024243.1-201ENST00000609234 778 ntBASIC20.52■□□□□ 0.88
LONRF3Q496Y0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 AP000550.4-202ENST00000639755 178 ntBASIC20.52■□□□□ 0.88
LONRF3Q496Y0 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LONRF3Q496Y0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
LONRF3Q496Y0 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LONRF3Q496Y0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LONRF3Q496Y0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 IER3-202ENST00000376377 1350 ntBASIC20.51■□□□□ 0.87
LONRF3Q496Y0 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 MIR3180-4-201ENST00000582223 153 ntBASIC20.51■□□□□ 0.87
LONRF3Q496Y0 AL121956.5-201ENST00000625261 221 ntBASIC20.51■□□□□ 0.87
LONRF3Q496Y0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 AC005332.1-201ENST00000577698 1310 ntBASIC20.51■□□□□ 0.87
LONRF3Q496Y0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LONRF3Q496Y0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SEC1P-202ENST00000473944 940 ntBASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 AC010240.3-201ENST00000607688 395 ntBASIC20.5■□□□□ 0.87
LONRF3Q496Y0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LONRF3Q496Y0 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LONRF3Q496Y0 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LONRF3Q496Y0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms