Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 AC090340.1-201ENST00000620778 4980 ntBASIC17.32■□□□□ 0.36
COL28A1Q2UY09 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 KRT18P23-201ENST00000435622 1283 ntBASIC17.32■□□□□ 0.36
COL28A1Q2UY09 AC132008.2-207ENST00000454517 770 ntBASIC17.32■□□□□ 0.36
COL28A1Q2UY09 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 AC034105.1-201ENST00000563488 319 ntBASIC17.31■□□□□ 0.36
COL28A1Q2UY09 AL596442.2-201ENST00000610240 980 ntBASIC17.31■□□□□ 0.36
COL28A1Q2UY09 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL28A1Q2UY09 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 AC093503.3-201ENST00000624917 2352 ntBASIC17.3■□□□□ 0.36
COL28A1Q2UY09 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 AC011840.4-201ENST00000578471 627 ntBASIC17.3■□□□□ 0.36
COL28A1Q2UY09 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL28A1Q2UY09 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.29■□□□□ 0.36
COL28A1Q2UY09 BNIP3P18-201ENST00000593976 575 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms