Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
COL7A1Q02388 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 YTHDF3-AS1-201ENST00000603538 718 ntBASIC12.82□□□□□ -0.36
COL7A1Q02388 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.81□□□□□ -0.36
COL7A1Q02388 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.81□□□□□ -0.36
COL7A1Q02388 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 AC069262.1-201ENST00000539058 672 ntBASIC12.81□□□□□ -0.36
COL7A1Q02388 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC12.81□□□□□ -0.36
COL7A1Q02388 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC12.81□□□□□ -0.36
COL7A1Q02388 AC008761.3-201ENST00000624803 892 ntBASIC12.81□□□□□ -0.36
COL7A1Q02388 LINC00628-201ENST00000628516 1289 ntBASIC12.81□□□□□ -0.36
COL7A1Q02388 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC12.81□□□□□ -0.36
COL7A1Q02388 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC12.81□□□□□ -0.36
COL7A1Q02388 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.81□□□□□ -0.36
COL7A1Q02388 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC12.81□□□□□ -0.36
COL7A1Q02388 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC12.81□□□□□ -0.36
COL7A1Q02388 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC12.81□□□□□ -0.36
COL7A1Q02388 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC12.81□□□□□ -0.36
COL7A1Q02388 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.81□□□□□ -0.36
COL7A1Q02388 AC015911.4-201ENST00000588022 1070 ntBASIC12.81□□□□□ -0.36
COL7A1Q02388 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
COL7A1Q02388 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL7A1Q02388 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL7A1Q02388 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
COL7A1Q02388 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC12.8□□□□□ -0.36
COL7A1Q02388 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC12.8□□□□□ -0.36
COL7A1Q02388 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
COL7A1Q02388 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 ELK2BP-201ENST00000415014 1224 ntBASIC12.8□□□□□ -0.36
COL7A1Q02388 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.8□□□□□ -0.36
COL7A1Q02388 CYB561-217ENST00000582997 877 ntTSL 5 BASIC12.8□□□□□ -0.36
COL7A1Q02388 MIR6752-201ENST00000618442 71 ntBASIC12.8□□□□□ -0.36
COL7A1Q02388 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC12.8□□□□□ -0.36
COL7A1Q02388 AC093484.2-201ENST00000580996 2166 ntBASIC12.8□□□□□ -0.36
COL7A1Q02388 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC12.8□□□□□ -0.36
COL7A1Q02388 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
COL7A1Q02388 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 LINC01126-201ENST00000623515 1646 ntBASIC12.8□□□□□ -0.36
COL7A1Q02388 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC12.8□□□□□ -0.36
COL7A1Q02388 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 AC096633.1-201ENST00000422446 749 ntBASIC12.8□□□□□ -0.36
COL7A1Q02388 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
COL7A1Q02388 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
COL7A1Q02388 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.8□□□□□ -0.36
COL7A1Q02388 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC12.8□□□□□ -0.36
COL7A1Q02388 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.8□□□□□ -0.36
COL7A1Q02388 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL7A1Q02388 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 CRYGEP-201ENST00000412192 528 ntBASIC12.79□□□□□ -0.36
COL7A1Q02388 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC12.79□□□□□ -0.36
COL7A1Q02388 TSPY16P-201ENST00000449843 468 ntBASIC12.79□□□□□ -0.36
COL7A1Q02388 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.79□□□□□ -0.36
COL7A1Q02388 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL7A1Q02388 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC12.79□□□□□ -0.36
COL7A1Q02388 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC12.79□□□□□ -0.36
COL7A1Q02388 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
COL7A1Q02388 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL7A1Q02388 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms