Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL133373.2-201ENST00000623187 2828 ntBASIC17.52■□□□□ 0.39
HNF4AP41235 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.52■□□□□ 0.39
HNF4AP41235 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
HNF4AP41235 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.52■□□□□ 0.39
HNF4AP41235 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.51■□□□□ 0.39
HNF4AP41235 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.51■□□□□ 0.39
HNF4AP41235 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.51■□□□□ 0.39
HNF4AP41235 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HNF4AP41235 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.51■□□□□ 0.39
HNF4AP41235 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.51■□□□□ 0.39
HNF4AP41235 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.51■□□□□ 0.39
HNF4AP41235 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.51■□□□□ 0.39
HNF4AP41235 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
HNF4AP41235 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.51■□□□□ 0.39
HNF4AP41235 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HNF4AP41235 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HNF4AP41235 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.5■□□□□ 0.39
HNF4AP41235 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HNF4AP41235 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.5■□□□□ 0.39
HNF4AP41235 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.5■□□□□ 0.39
HNF4AP41235 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HNF4AP41235 KRT18P38-201ENST00000449496 1282 ntBASIC17.5■□□□□ 0.39
HNF4AP41235 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HNF4AP41235 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.5■□□□□ 0.39
HNF4AP41235 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.5■□□□□ 0.39
HNF4AP41235 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HNF4AP41235 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 AP000997.3-201ENST00000623333 2250 ntBASIC17.49■□□□□ 0.39
HNF4AP41235 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
HNF4AP41235 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.49■□□□□ 0.39
HNF4AP41235 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.49■□□□□ 0.39
HNF4AP41235 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 AL049597.2-201ENST00000565575 961 ntBASIC17.49■□□□□ 0.39
HNF4AP41235 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.49■□□□□ 0.39
HNF4AP41235 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HNF4AP41235 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.49■□□□□ 0.39
HNF4AP41235 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.49■□□□□ 0.39
HNF4AP41235 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HNF4AP41235 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.48■□□□□ 0.39
HNF4AP41235 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HNF4AP41235 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms