Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXC4P09017 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.54■□□□□ 0.4
HOXC4P09017 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.54■□□□□ 0.4
HOXC4P09017 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXC4P09017 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HOXC4P09017 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXC4P09017 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXC4P09017 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXC4P09017 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXC4P09017 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXC4P09017 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
HOXC4P09017 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXC4P09017 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.53■□□□□ 0.4
HOXC4P09017 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HOXC4P09017 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXC4P09017 MRPL3P1-201ENST00000400109 1033 ntBASIC17.53■□□□□ 0.4
HOXC4P09017 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.53■□□□□ 0.4
HOXC4P09017 KRT18P67-201ENST00000432816 1264 ntBASIC17.53■□□□□ 0.4
HOXC4P09017 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
HOXC4P09017 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
HOXC4P09017 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 AD001527.2-201ENST00000622994 785 ntBASIC17.53■□□□□ 0.4
HOXC4P09017 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXC4P09017 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXC4P09017 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXC4P09017 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXC4P09017 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HOXC4P09017 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXC4P09017 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HOXC4P09017 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.52■□□□□ 0.4
HOXC4P09017 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.52■□□□□ 0.4
HOXC4P09017 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.52■□□□□ 0.4
HOXC4P09017 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HOXC4P09017 AF186996.4-201ENST00000467186 377 ntBASIC17.52■□□□□ 0.4
HOXC4P09017 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.52■□□□□ 0.4
HOXC4P09017 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HOXC4P09017 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.52■□□□□ 0.4
HOXC4P09017 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.52■□□□□ 0.4
HOXC4P09017 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
HOXC4P09017 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.52■□□□□ 0.4
HOXC4P09017 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXC4P09017 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXC4P09017 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HOXC4P09017 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
HOXC4P09017 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.52■□□□□ 0.39
HOXC4P09017 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.52■□□□□ 0.39
HOXC4P09017 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HOXC4P09017 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXC4P09017 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HOXC4P09017 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HOXC4P09017 HLA-A-201ENST00000376802 1334 ntBASIC17.51■□□□□ 0.39
HOXC4P09017 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HOXC4P09017 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXC4P09017 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXC4P09017 DDX43P3-201ENST00000441064 443 ntBASIC17.51■□□□□ 0.39
HOXC4P09017 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.51■□□□□ 0.39
HOXC4P09017 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXC4P09017 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 RNA5SP419-201ENST00000515908 135 ntBASIC17.51■□□□□ 0.39
HOXC4P09017 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXC4P09017 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.51■□□□□ 0.39
HOXC4P09017 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 AL773604.1-201ENST00000617417 272 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms