Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LDLRP01130 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
LDLRP01130 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
LDLRP01130 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.44■□□□□ 0.38
LDLRP01130 CCR12P-201ENST00000446203 998 ntBASIC17.44■□□□□ 0.38
LDLRP01130 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.44■□□□□ 0.38
LDLRP01130 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.44■□□□□ 0.38
LDLRP01130 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.44■□□□□ 0.38
LDLRP01130 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.44■□□□□ 0.38
LDLRP01130 AP000692.2-201ENST00000608391 879 ntBASIC17.44■□□□□ 0.38
LDLRP01130 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 AC131212.4-201ENST00000623606 975 ntBASIC17.44■□□□□ 0.38
LDLRP01130 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.44■□□□□ 0.38
LDLRP01130 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.44■□□□□ 0.38
LDLRP01130 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.44■□□□□ 0.38
LDLRP01130 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
LDLRP01130 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
LDLRP01130 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.43■□□□□ 0.38
LDLRP01130 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.43■□□□□ 0.38
LDLRP01130 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.43■□□□□ 0.38
LDLRP01130 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.43■□□□□ 0.38
LDLRP01130 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.43■□□□□ 0.38
LDLRP01130 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.43■□□□□ 0.38
LDLRP01130 AL691432.3-201ENST00000621860 400 ntBASIC17.43■□□□□ 0.38
LDLRP01130 AC011558.1-201ENST00000623459 338 ntBASIC17.43■□□□□ 0.38
LDLRP01130 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 AC112777.1-201ENST00000540175 1423 ntBASIC17.43■□□□□ 0.38
LDLRP01130 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LDLRP01130 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
LDLRP01130 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.43■□□□□ 0.38
LDLRP01130 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LDLRP01130 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
LDLRP01130 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LDLRP01130 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.42■□□□□ 0.38
LDLRP01130 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
LDLRP01130 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LDLRP01130 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
LDLRP01130 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.42■□□□□ 0.38
LDLRP01130 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.42■□□□□ 0.38
LDLRP01130 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.42■□□□□ 0.38
LDLRP01130 AC130371.2-201ENST00000619443 611 ntBASIC17.42■□□□□ 0.38
LDLRP01130 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms