Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.29■□□□□ 0.36
SEMA3DO95025 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SEMA3DO95025 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SEMA3DO95025 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
SEMA3DO95025 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SEMA3DO95025 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.29■□□□□ 0.36
SEMA3DO95025 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
SEMA3DO95025 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.29■□□□□ 0.36
SEMA3DO95025 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SEMA3DO95025 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SEMA3DO95025 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
SEMA3DO95025 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.28■□□□□ 0.36
SEMA3DO95025 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.28■□□□□ 0.36
SEMA3DO95025 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 KRT18P55-202ENST00000578578 1546 ntBASIC17.28■□□□□ 0.36
SEMA3DO95025 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SEMA3DO95025 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
SEMA3DO95025 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 AL391807.1-203ENST00000604392 2365 ntBASIC17.28■□□□□ 0.36
SEMA3DO95025 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SEMA3DO95025 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 RNF152P1-201ENST00000397754 604 ntBASIC17.28■□□□□ 0.36
SEMA3DO95025 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SEMA3DO95025 HOMER2P1-201ENST00000455653 964 ntBASIC17.28■□□□□ 0.36
SEMA3DO95025 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.28■□□□□ 0.36
SEMA3DO95025 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.28■□□□□ 0.36
SEMA3DO95025 AC024563.2-201ENST00000603282 481 ntBASIC17.28■□□□□ 0.36
SEMA3DO95025 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.28■□□□□ 0.36
SEMA3DO95025 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SEMA3DO95025 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 LINC00167-201ENST00000530583 1419 ntBASIC17.28■□□□□ 0.36
SEMA3DO95025 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
SEMA3DO95025 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SEMA3DO95025 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
SEMA3DO95025 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SEMA3DO95025 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.27■□□□□ 0.36
SEMA3DO95025 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 AC132938.6-201ENST00000623828 1655 ntBASIC17.27■□□□□ 0.36
SEMA3DO95025 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
SEMA3DO95025 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 HLA-F-220ENST00000434407 884 ntBASIC17.27■□□□□ 0.36
SEMA3DO95025 KRT18P57-201ENST00000443599 1254 ntBASIC17.27■□□□□ 0.36
SEMA3DO95025 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.27■□□□□ 0.36
SEMA3DO95025 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.27■□□□□ 0.36
SEMA3DO95025 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.27■□□□□ 0.36
SEMA3DO95025 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 AC079602.3-201ENST00000623931 403 ntBASIC17.27■□□□□ 0.36
SEMA3DO95025 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.27■□□□□ 0.36
SEMA3DO95025 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.27■□□□□ 0.36
SEMA3DO95025 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.27■□□□□ 0.36
SEMA3DO95025 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SEMA3DO95025 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
SEMA3DO95025 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SEMA3DO95025 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.27■□□□□ 0.35
SEMA3DO95025 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SEMA3DO95025 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.27■□□□□ 0.35
SEMA3DO95025 AC139713.2-201ENST00000641328 2723 ntBASIC17.27■□□□□ 0.35
SEMA3DO95025 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SEMA3DO95025 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms