Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.14■□□□□ 0.33
PROM1O43490 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.14■□□□□ 0.33
PROM1O43490 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.14■□□□□ 0.33
PROM1O43490 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PROM1O43490 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.13■□□□□ 0.33
PROM1O43490 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PROM1O43490 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
PROM1O43490 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.13■□□□□ 0.33
PROM1O43490 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PROM1O43490 KRT18P48-201ENST00000434763 852 ntBASIC17.13■□□□□ 0.33
PROM1O43490 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.13■□□□□ 0.33
PROM1O43490 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.13■□□□□ 0.33
PROM1O43490 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.13■□□□□ 0.33
PROM1O43490 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.13■□□□□ 0.33
PROM1O43490 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.13■□□□□ 0.33
PROM1O43490 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
PROM1O43490 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PROM1O43490 AC132938.6-201ENST00000623828 1655 ntBASIC17.13■□□□□ 0.33
PROM1O43490 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.13■□□□□ 0.33
PROM1O43490 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PROM1O43490 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 AL671277.2-201ENST00000458060 996 ntBASIC17.12■□□□□ 0.33
PROM1O43490 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.12■□□□□ 0.33
PROM1O43490 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.12■□□□□ 0.33
PROM1O43490 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.12■□□□□ 0.33
PROM1O43490 ZNF444P1-201ENST00000559497 298 ntBASIC17.12■□□□□ 0.33
PROM1O43490 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PROM1O43490 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PROM1O43490 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.12■□□□□ 0.33
PROM1O43490 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PROM1O43490 LINC00167-201ENST00000530583 1419 ntBASIC17.12■□□□□ 0.33
PROM1O43490 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.11■□□□□ 0.33
PROM1O43490 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.11■□□□□ 0.33
PROM1O43490 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.11■□□□□ 0.33
PROM1O43490 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PROM1O43490 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
PROM1O43490 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.11■□□□□ 0.33
PROM1O43490 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.11■□□□□ 0.33
PROM1O43490 SPDYE13P-201ENST00000445314 798 ntBASIC17.11■□□□□ 0.33
PROM1O43490 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.11■□□□□ 0.33
PROM1O43490 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 NTF6B-201ENST00000591913 560 ntBASIC17.11■□□□□ 0.33
PROM1O43490 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
PROM1O43490 AC083849.1-201ENST00000615227 514 ntBASIC17.11■□□□□ 0.33
PROM1O43490 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.11■□□□□ 0.33
PROM1O43490 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PROM1O43490 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms