Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC96Q2M329 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC96Q2M329 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CCDC96Q2M329 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC96Q2M329 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CCDC96Q2M329 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CCDC96Q2M329 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21■□□□□ 0.95
CCDC96Q2M329 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21■□□□□ 0.95
CCDC96Q2M329 KRT18P65-201ENST00000439811 1286 ntBASIC21■□□□□ 0.95
CCDC96Q2M329 MTCL1P1-201ENST00000446207 792 ntBASIC21■□□□□ 0.95
CCDC96Q2M329 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CCDC96Q2M329 KRT18P31-201ENST00000506277 1292 ntBASIC21■□□□□ 0.95
CCDC96Q2M329 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21■□□□□ 0.95
CCDC96Q2M329 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21■□□□□ 0.95
CCDC96Q2M329 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21■□□□□ 0.95
CCDC96Q2M329 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21■□□□□ 0.95
CCDC96Q2M329 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC96Q2M329 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CCDC96Q2M329 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21■□□□□ 0.95
CCDC96Q2M329 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC96Q2M329 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21■□□□□ 0.95
CCDC96Q2M329 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CCDC96Q2M329 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21■□□□□ 0.95
CCDC96Q2M329 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC96Q2M329 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 AC096582.2-201ENST00000510860 516 ntBASIC20.99■□□□□ 0.95
CCDC96Q2M329 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 AL353801.3-201ENST00000609898 542 ntBASIC20.99■□□□□ 0.95
CCDC96Q2M329 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC96Q2M329 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC96Q2M329 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 PHGDH-209ENST00000641074 1780 ntBASIC20.98■□□□□ 0.95
CCDC96Q2M329 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 LINC01711-201ENST00000598340 967 ntBASIC20.98■□□□□ 0.95
CCDC96Q2M329 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 HTR7P1-202ENST00000624664 4411 ntBASIC20.98■□□□□ 0.95
CCDC96Q2M329 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC96Q2M329 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC96Q2M329 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms