Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.63■□□□□ 0.57
NEK3P51956 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.63■□□□□ 0.57
NEK3P51956 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NEK3P51956 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
NEK3P51956 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.62■□□□□ 0.57
NEK3P51956 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NEK3P51956 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NEK3P51956 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 AC134043.2-201ENST00000624206 2238 ntBASIC18.62■□□□□ 0.57
NEK3P51956 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.62■□□□□ 0.57
NEK3P51956 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.62■□□□□ 0.57
NEK3P51956 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.62■□□□□ 0.57
NEK3P51956 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
NEK3P51956 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 GNAS-203ENST00000306120 1878 ntBASIC18.62■□□□□ 0.57
NEK3P51956 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.62■□□□□ 0.57
NEK3P51956 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NEK3P51956 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NEK3P51956 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.61■□□□□ 0.57
NEK3P51956 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NEK3P51956 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.61■□□□□ 0.57
NEK3P51956 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NEK3P51956 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
NEK3P51956 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.61■□□□□ 0.57
NEK3P51956 HLA-F-220ENST00000434407 884 ntBASIC18.61■□□□□ 0.57
NEK3P51956 SLC25A6P5-201ENST00000435663 894 ntBASIC18.61■□□□□ 0.57
NEK3P51956 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.61■□□□□ 0.57
NEK3P51956 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.61■□□□□ 0.57
NEK3P51956 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.61■□□□□ 0.57
NEK3P51956 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.61■□□□□ 0.57
NEK3P51956 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.61■□□□□ 0.57
NEK3P51956 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.61■□□□□ 0.57
NEK3P51956 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.61■□□□□ 0.57
NEK3P51956 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NEK3P51956 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.6■□□□□ 0.57
NEK3P51956 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 AL391807.1-203ENST00000604392 2365 ntBASIC18.6■□□□□ 0.57
NEK3P51956 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
NEK3P51956 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.6■□□□□ 0.57
NEK3P51956 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.6■□□□□ 0.57
NEK3P51956 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.6■□□□□ 0.57
NEK3P51956 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.6■□□□□ 0.57
NEK3P51956 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.6■□□□□ 0.57
NEK3P51956 AC009065.1-201ENST00000564055 1225 ntBASIC18.6■□□□□ 0.57
NEK3P51956 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.6■□□□□ 0.57
NEK3P51956 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms