Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SOX3P41225 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.02■□□□□ 0.31
SOX3P41225 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.02■□□□□ 0.31
SOX3P41225 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SOX3P41225 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SOX3P41225 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SOX3P41225 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
SOX3P41225 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
SOX3P41225 IER3-202ENST00000376377 1350 ntBASIC17.02■□□□□ 0.31
SOX3P41225 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SOX3P41225 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
SOX3P41225 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
SOX3P41225 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.01■□□□□ 0.31
SOX3P41225 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.01■□□□□ 0.31
SOX3P41225 AC126763.1-201ENST00000552015 2118 ntBASIC17.01■□□□□ 0.31
SOX3P41225 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 MIR3180-4-201ENST00000582223 153 ntBASIC17.01■□□□□ 0.31
SOX3P41225 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.01■□□□□ 0.31
SOX3P41225 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
SOX3P41225 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SOX3P41225 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
SOX3P41225 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SOX3P41225 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 AL391807.1-203ENST00000604392 2365 ntBASIC17.01■□□□□ 0.31
SOX3P41225 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SOX3P41225 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SOX3P41225 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SOX3P41225 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17■□□□□ 0.31
SOX3P41225 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17■□□□□ 0.31
SOX3P41225 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 AC008764.6-201ENST00000595909 2069 ntBASIC17■□□□□ 0.31
SOX3P41225 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SOX3P41225 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
SOX3P41225 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17■□□□□ 0.31
SOX3P41225 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17■□□□□ 0.31
SOX3P41225 AP000593.1-201ENST00000393668 712 ntBASIC17■□□□□ 0.31
SOX3P41225 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17■□□□□ 0.31
SOX3P41225 UPK3BP1-201ENST00000428678 509 ntBASIC17■□□□□ 0.31
SOX3P41225 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17■□□□□ 0.31
SOX3P41225 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17■□□□□ 0.31
SOX3P41225 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17■□□□□ 0.31
SOX3P41225 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17■□□□□ 0.31
SOX3P41225 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17■□□□□ 0.31
SOX3P41225 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17■□□□□ 0.31
SOX3P41225 AC116407.4-201ENST00000623319 1061 ntBASIC17■□□□□ 0.31
SOX3P41225 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17■□□□□ 0.31
SOX3P41225 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SOX3P41225 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 HTR7P1-202ENST00000624664 4411 ntBASIC17■□□□□ 0.31
SOX3P41225 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SOX3P41225 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17■□□□□ 0.31
SOX3P41225 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
SOX3P41225 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
SOX3P41225 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX3P41225 AC106820.2-201ENST00000563775 3264 ntBASIC16.99■□□□□ 0.31
SOX3P41225 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX3P41225 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SOX3P41225 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
SOX3P41225 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.99■□□□□ 0.31
SOX3P41225 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms