Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC30.06■■■□□ 2.4
CUX1P39880 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC30.06■■■□□ 2.4
CUX1P39880 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 KLF4P1-201ENST00000412782 1185 ntBASIC30.06■■■□□ 2.4
CUX1P39880 SLC4A1APP2-201ENST00000424054 1259 ntBASIC30.06■■■□□ 2.4
CUX1P39880 MIR3197-201ENST00000582241 73 ntBASIC30.06■■■□□ 2.4
CUX1P39880 AC019129.2-201ENST00000609837 1235 ntBASIC30.06■■■□□ 2.4
CUX1P39880 AL805961.1-202ENST00000641562 540 ntBASIC30.06■■■□□ 2.4
CUX1P39880 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CUX1P39880 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC30.05■■■□□ 2.4
CUX1P39880 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CUX1P39880 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CUX1P39880 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC30.05■■■□□ 2.4
CUX1P39880 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CUX1P39880 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CUX1P39880 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CUX1P39880 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC30.05■■■□□ 2.4
CUX1P39880 RPS15P9-201ENST00000494093 319 ntBASIC30.05■■■□□ 2.4
CUX1P39880 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CUX1P39880 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
CUX1P39880 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC30.05■■■□□ 2.4
CUX1P39880 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC30.04■■■□□ 2.4
CUX1P39880 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
CUX1P39880 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC30.04■■■□□ 2.4
CUX1P39880 PON3-203ENST00000427422 894 ntTSL 3 BASIC30.04■■■□□ 2.4
CUX1P39880 CNN2P11-201ENST00000429351 262 ntBASIC30.04■■■□□ 2.4
CUX1P39880 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CUX1P39880 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
CUX1P39880 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC30.04■■■□□ 2.4
CUX1P39880 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC30.04■■■□□ 2.4
CUX1P39880 ADM-207ENST00000530439 1839 ntTSL 2 BASIC30.03■■■□□ 2.4
CUX1P39880 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CUX1P39880 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC30.03■■■□□ 2.4
CUX1P39880 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC30.03■■■□□ 2.4
CUX1P39880 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC30.03■■■□□ 2.4
CUX1P39880 COX5A-202ENST00000562233 441 ntTSL 3 BASIC30.03■■■□□ 2.4
CUX1P39880 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC30.03■■■□□ 2.4
CUX1P39880 ORC5-208ENST00000626700 344 ntTSL 3 BASIC30.03■■■□□ 2.4
CUX1P39880 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CUX1P39880 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CUX1P39880 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CUX1P39880 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CUX1P39880 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC30.03■■■□□ 2.4
CUX1P39880 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC30.02■■■□□ 2.4
CUX1P39880 CRYGEP-201ENST00000412192 528 ntBASIC30.02■■■□□ 2.4
CUX1P39880 PON3-205ENST00000451904 1053 ntTSL 3 BASIC30.02■■■□□ 2.4
CUX1P39880 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC30.02■■■□□ 2.4
CUX1P39880 POLD4-207ENST00000531239 584 ntTSL 2 BASIC30.02■■■□□ 2.4
CUX1P39880 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC30.02■■■□□ 2.4
CUX1P39880 PDPK2P-202ENST00000562415 1191 ntBASIC30.02■■■□□ 2.4
CUX1P39880 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 SIRPAP1-201ENST00000448467 1770 ntBASIC30.02■■■□□ 2.4
CUX1P39880 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC30.02■■■□□ 2.4
CUX1P39880 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
CUX1P39880 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX1P39880 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
CUX1P39880 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.4
CUX1P39880 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC30.01■■■□□ 2.4
CUX1P39880 AL020989.1-201ENST00000422979 469 ntBASIC30.01■■■□□ 2.4
CUX1P39880 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC30.01■■■□□ 2.4
CUX1P39880 MAL2-202ENST00000531508 892 ntTSL 3 BASIC30.01■■■□□ 2.4
CUX1P39880 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC30.01■■■□□ 2.4
CUX1P39880 RPL28-205ENST00000558131 444 ntTSL 5 BASIC30.01■■■□□ 2.4
CUX1P39880 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC30.01■■■□□ 2.4
CUX1P39880 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
CUX1P39880 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC30.01■■■□□ 2.39
CUX1P39880 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CUX1P39880 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CUX1P39880 AL049757.1-201ENST00000616842 1596 ntBASIC30.01■■■□□ 2.39
CUX1P39880 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
CUX1P39880 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.39
CUX1P39880 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC30.01■■■□□ 2.39
CUX1P39880 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC30.01■■■□□ 2.39
CUX1P39880 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC30.01■■■□□ 2.39
CUX1P39880 VN2R19P-201ENST00000442399 1052 ntBASIC30.01■■■□□ 2.39
CUX1P39880 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CUX1P39880 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC30.01■■■□□ 2.39
CUX1P39880 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
CUX1P39880 AC010654.1-201ENST00000615722 808 ntBASIC30.01■■■□□ 2.39
CUX1P39880 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CUX1P39880 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
CUX1P39880 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC30■■■□□ 2.39
CUX1P39880 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC30■■■□□ 2.39
CUX1P39880 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CUX1P39880 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC30■■■□□ 2.39
CUX1P39880 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms