Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.32■□□□□ 0.36
SEMA3DO95025 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.32■□□□□ 0.36
SEMA3DO95025 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.31■□□□□ 0.36
SEMA3DO95025 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SEMA3DO95025 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.31■□□□□ 0.36
SEMA3DO95025 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.31■□□□□ 0.36
SEMA3DO95025 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.31■□□□□ 0.36
SEMA3DO95025 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.31■□□□□ 0.36
SEMA3DO95025 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.31■□□□□ 0.36
SEMA3DO95025 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
SEMA3DO95025 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.31■□□□□ 0.36
SEMA3DO95025 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.31■□□□□ 0.36
SEMA3DO95025 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
SEMA3DO95025 AC139887.4-201ENST00000607877 719 ntBASIC17.31■□□□□ 0.36
SEMA3DO95025 AC011558.1-201ENST00000623459 338 ntBASIC17.31■□□□□ 0.36
SEMA3DO95025 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SEMA3DO95025 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SEMA3DO95025 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.31■□□□□ 0.36
SEMA3DO95025 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.31■□□□□ 0.36
SEMA3DO95025 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SEMA3DO95025 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SEMA3DO95025 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SEMA3DO95025 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.31■□□□□ 0.36
SEMA3DO95025 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.31■□□□□ 0.36
SEMA3DO95025 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.3■□□□□ 0.36
SEMA3DO95025 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.3■□□□□ 0.36
SEMA3DO95025 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
SEMA3DO95025 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.3■□□□□ 0.36
SEMA3DO95025 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SEMA3DO95025 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.3■□□□□ 0.36
SEMA3DO95025 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 AC117947.1-201ENST00000427448 529 ntBASIC17.3■□□□□ 0.36
SEMA3DO95025 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.3■□□□□ 0.36
SEMA3DO95025 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.3■□□□□ 0.36
SEMA3DO95025 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
SEMA3DO95025 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.3■□□□□ 0.36
SEMA3DO95025 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.3■□□□□ 0.36
SEMA3DO95025 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.3■□□□□ 0.36
SEMA3DO95025 AL136038.4-201ENST00000603606 1261 ntBASIC17.3■□□□□ 0.36
SEMA3DO95025 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.3■□□□□ 0.36
SEMA3DO95025 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SEMA3DO95025 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SEMA3DO95025 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SEMA3DO95025 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SEMA3DO95025 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.29■□□□□ 0.36
SEMA3DO95025 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SEMA3DO95025 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SEMA3DO95025 SPDYE15P-201ENST00000424157 909 ntBASIC17.29■□□□□ 0.36
SEMA3DO95025 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.29■□□□□ 0.36
SEMA3DO95025 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SEMA3DO95025 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms