Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.01■□□□□ 0.31
LDB3O75112 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB3O75112 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.01■□□□□ 0.31
LDB3O75112 AC011498.5-201ENST00000592027 486 ntBASIC17.01■□□□□ 0.31
LDB3O75112 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.01■□□□□ 0.31
LDB3O75112 AL390719.2-201ENST00000606993 987 ntBASIC17.01■□□□□ 0.31
LDB3O75112 AC116407.4-201ENST00000623319 1061 ntBASIC17.01■□□□□ 0.31
LDB3O75112 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB3O75112 AP000997.3-201ENST00000623333 2250 ntBASIC17.01■□□□□ 0.31
LDB3O75112 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB3O75112 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 IER3-202ENST00000376377 1350 ntBASIC17.01■□□□□ 0.31
LDB3O75112 AL353692.3-201ENST00000407031 1396 ntBASIC17.01■□□□□ 0.31
LDB3O75112 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LDB3O75112 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB3O75112 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB3O75112 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LDB3O75112 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17■□□□□ 0.31
LDB3O75112 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
LDB3O75112 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
LDB3O75112 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17■□□□□ 0.31
LDB3O75112 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
LDB3O75112 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17■□□□□ 0.31
LDB3O75112 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17■□□□□ 0.31
LDB3O75112 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 TSPY22P-201ENST00000427496 604 ntBASIC17■□□□□ 0.31
LDB3O75112 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17■□□□□ 0.31
LDB3O75112 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
LDB3O75112 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17■□□□□ 0.31
LDB3O75112 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17■□□□□ 0.31
LDB3O75112 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17■□□□□ 0.31
LDB3O75112 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17■□□□□ 0.31
LDB3O75112 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17■□□□□ 0.31
LDB3O75112 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
LDB3O75112 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LDB3O75112 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17■□□□□ 0.31
LDB3O75112 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17■□□□□ 0.31
LDB3O75112 AC090340.1-201ENST00000620778 4980 ntBASIC16.99■□□□□ 0.31
LDB3O75112 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LDB3O75112 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
LDB3O75112 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LDB3O75112 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.99■□□□□ 0.31
LDB3O75112 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
LDB3O75112 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.99■□□□□ 0.31
LDB3O75112 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
LDB3O75112 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
LDB3O75112 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.99■□□□□ 0.31
LDB3O75112 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.99■□□□□ 0.31
LDB3O75112 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.99■□□□□ 0.31
LDB3O75112 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.99■□□□□ 0.31
LDB3O75112 AP000550.4-202ENST00000639755 178 ntBASIC16.99■□□□□ 0.31
LDB3O75112 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.99■□□□□ 0.31
LDB3O75112 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.99■□□□□ 0.31
LDB3O75112 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.99■□□□□ 0.31
LDB3O75112 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.99■□□□□ 0.31
LDB3O75112 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LDB3O75112 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
LDB3O75112 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms