Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC28A1O00337 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC28A1O00337 AC022898.2-201ENST00000616822 1312 ntBASIC17.42■□□□□ 0.38
SLC28A1O00337 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC28A1O00337 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC28A1O00337 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SLC28A1O00337 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC28A1O00337 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC28A1O00337 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
SLC28A1O00337 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC28A1O00337 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC28A1O00337 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC28A1O00337 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SLC28A1O00337 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SLC28A1O00337 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC28A1O00337 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.41■□□□□ 0.38
SLC28A1O00337 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
SLC28A1O00337 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.41■□□□□ 0.38
SLC28A1O00337 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.41■□□□□ 0.38
SLC28A1O00337 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC28A1O00337 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.41■□□□□ 0.38
SLC28A1O00337 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 AC092865.7-201ENST00000641832 219 ntBASIC17.41■□□□□ 0.38
SLC28A1O00337 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.41■□□□□ 0.38
SLC28A1O00337 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.41■□□□□ 0.38
SLC28A1O00337 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC28A1O00337 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SLC28A1O00337 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC28A1O00337 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SLC28A1O00337 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
SLC28A1O00337 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.4■□□□□ 0.38
SLC28A1O00337 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 CYP2D8P-201ENST00000433633 1490 ntBASIC17.4■□□□□ 0.38
SLC28A1O00337 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.4■□□□□ 0.38
SLC28A1O00337 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.4■□□□□ 0.38
SLC28A1O00337 NEK4P2-201ENST00000580004 1012 ntBASIC17.4■□□□□ 0.38
SLC28A1O00337 MIR4497-201ENST00000583208 89 ntBASIC17.4■□□□□ 0.38
SLC28A1O00337 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.4■□□□□ 0.38
SLC28A1O00337 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.4■□□□□ 0.38
SLC28A1O00337 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SLC28A1O00337 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SLC28A1O00337 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC28A1O00337 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
SLC28A1O00337 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SLC28A1O00337 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 MMP23A-201ENST00000234610 1017 ntBASIC17.39■□□□□ 0.37
SLC28A1O00337 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SLC28A1O00337 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
SLC28A1O00337 HMGA1P5-201ENST00000412453 271 ntBASIC17.39■□□□□ 0.37
SLC28A1O00337 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.39■□□□□ 0.37
SLC28A1O00337 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.39■□□□□ 0.37
SLC28A1O00337 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.39■□□□□ 0.37
SLC28A1O00337 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 MIR3917-201ENST00000580971 93 ntBASIC17.39■□□□□ 0.37
SLC28A1O00337 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC28A1O00337 AC010947.1-201ENST00000623454 693 ntBASIC17.39■□□□□ 0.37
SLC28A1O00337 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC28A1O00337 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms