Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.32■□□□□ 0.68
SIX4Q9UIU6 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 AC012615.1-201ENST00000565797 1299 ntBASIC19.31■□□□□ 0.68
SIX4Q9UIU6 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 Z69720.1-201ENST00000601483 472 ntBASIC19.31■□□□□ 0.68
SIX4Q9UIU6 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SIX4Q9UIU6 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 AC074051.2-201ENST00000565115 352 ntBASIC19.3■□□□□ 0.68
SIX4Q9UIU6 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 FLJ13224-201ENST00000313737 1514 ntBASIC19.3■□□□□ 0.68
SIX4Q9UIU6 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 AC138028.4-201ENST00000564984 1845 ntBASIC19.3■□□□□ 0.68
SIX4Q9UIU6 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX4Q9UIU6 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 DUSP5P1-201ENST00000441325 1139 ntBASIC19.29■□□□□ 0.68
SIX4Q9UIU6 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 MIR3652-201ENST00000579335 131 ntBASIC19.29■□□□□ 0.68
SIX4Q9UIU6 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 NSUN5P1-202ENST00000421140 1535 ntBASIC19.29■□□□□ 0.68
SIX4Q9UIU6 NSUN5P2-203ENST00000457352 1529 ntBASIC19.29■□□□□ 0.68
SIX4Q9UIU6 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX4Q9UIU6 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms