Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CHMP1AQ9HD42 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 CKBP1-201ENST00000565489 1086 ntBASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 AC026271.3-201ENST00000571884 352 ntBASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CHMP1AQ9HD42 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 MYLKP1-201ENST00000509077 1580 ntBASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 TNRC18P3-201ENST00000441896 2691 ntBASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms