Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM47Q96LD4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM47Q96LD4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TRIM47Q96LD4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.13■□□□□ 0.97
TRIM47Q96LD4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM47Q96LD4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.13■□□□□ 0.97
TRIM47Q96LD4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM47Q96LD4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 HMGN1P19-201ENST00000436976 333 ntBASIC21.12■□□□□ 0.97
TRIM47Q96LD4 AC096582.2-201ENST00000510860 516 ntBASIC21.12■□□□□ 0.97
TRIM47Q96LD4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 AC114341.1-201ENST00000618070 349 ntBASIC21.12■□□□□ 0.97
TRIM47Q96LD4 AL691403.2-201ENST00000618460 490 ntBASIC21.12■□□□□ 0.97
TRIM47Q96LD4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 AC055717.3-201ENST00000622967 595 ntBASIC21.12■□□□□ 0.97
TRIM47Q96LD4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM47Q96LD4 ZNF259P1-201ENST00000407656 1365 ntBASIC21.11■□□□□ 0.97
TRIM47Q96LD4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 HNRNPDP1-201ENST00000439535 754 ntBASIC21.11■□□□□ 0.97
TRIM47Q96LD4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 FEM1AP3-201ENST00000403722 1741 ntBASIC21.11■□□□□ 0.97
TRIM47Q96LD4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM47Q96LD4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 KRT89P-201ENST00000620027 1478 ntBASIC21.1■□□□□ 0.97
TRIM47Q96LD4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 PGAM5P1-201ENST00000518923 814 ntBASIC21.1■□□□□ 0.97
TRIM47Q96LD4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM47Q96LD4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 KRT8P32-201ENST00000512863 1461 ntBASIC21.09■□□□□ 0.97
TRIM47Q96LD4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM47Q96LD4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms