Protein–RNA interactions for Protein: Q96GM5

SMARCD1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1Q96GM5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCD1Q96GM5 NSUN5P1-202ENST00000421140 1535 ntBASIC19■□□□□ 0.63
SMARCD1Q96GM5 NSUN5P2-203ENST00000457352 1529 ntBASIC19■□□□□ 0.63
SMARCD1Q96GM5 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 MINOS1P3-201ENST00000457048 203 ntBASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 AC020763.4-201ENST00000623414 4170 ntBASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 AC022898.2-201ENST00000616822 1312 ntBASIC18.99■□□□□ 0.63
SMARCD1Q96GM5 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 AC005336.2-201ENST00000593183 939 ntBASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 AC099336.1-202ENST00000602961 463 ntBASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCD1Q96GM5 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 REXO1L9P-201ENST00000604264 2108 ntBASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 KRT126P-201ENST00000549467 1181 ntBASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCD1Q96GM5 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms