Protein–RNA interactions for Protein: Q8TEC5

SH3RF2, Putative E3 ubiquitin-protein ligase SH3RF2, humanhuman

Predictions only

Length 729 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF2Q8TEC5 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF2Q8TEC5 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SH3RF2Q8TEC5 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.74■□□□□ 0.59
SH3RF2Q8TEC5 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF2Q8TEC5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF2Q8TEC5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF2Q8TEC5 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SH3RF2Q8TEC5 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SH3RF2Q8TEC5 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 RCN1P2-201ENST00000398357 915 ntBASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 MRPL3P1-201ENST00000400109 1033 ntBASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 AP000347.1-202ENST00000435868 847 ntBASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 AC106795.1-205ENST00000512851 1056 ntBASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF2Q8TEC5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 TP73-AS1-210ENST00000637775 1455 ntBASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 AC079776.4-201ENST00000511039 504 ntBASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 AL662844.1-201ENST00000546340 181 ntBASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF2Q8TEC5 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.71■□□□□ 0.58
SH3RF2Q8TEC5 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms