Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SHOX2O60902 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.12■□□□□ 0.49
SHOX2O60902 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.12■□□□□ 0.49
SHOX2O60902 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SHOX2O60902 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
SHOX2O60902 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.12■□□□□ 0.49
SHOX2O60902 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHOX2O60902 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.11■□□□□ 0.49
SHOX2O60902 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.11■□□□□ 0.49
SHOX2O60902 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SHOX2O60902 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SHOX2O60902 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.11■□□□□ 0.49
SHOX2O60902 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.11■□□□□ 0.49
SHOX2O60902 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SHOX2O60902 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.11■□□□□ 0.49
SHOX2O60902 OR10C1-204ENST00000622521 1039 ntBASIC18.11■□□□□ 0.49
SHOX2O60902 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.11■□□□□ 0.49
SHOX2O60902 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SHOX2O60902 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.11■□□□□ 0.49
SHOX2O60902 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
SHOX2O60902 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
SHOX2O60902 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 AL513523.2-202ENST00000427283 2040 ntBASIC18.11■□□□□ 0.49
SHOX2O60902 AC092068.3-201ENST00000587894 2016 ntBASIC18.11■□□□□ 0.49
SHOX2O60902 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.11■□□□□ 0.49
SHOX2O60902 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.11■□□□□ 0.49
SHOX2O60902 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.11■□□□□ 0.49
SHOX2O60902 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SHOX2O60902 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SHOX2O60902 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
SHOX2O60902 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.11■□□□□ 0.49
SHOX2O60902 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHOX2O60902 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 AC005915.1-201ENST00000624912 2018 ntBASIC18.1■□□□□ 0.49
SHOX2O60902 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.1■□□□□ 0.49
SHOX2O60902 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 AL162430.1-201ENST00000480705 870 ntBASIC18.1■□□□□ 0.49
SHOX2O60902 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.1■□□□□ 0.49
SHOX2O60902 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.1■□□□□ 0.49
SHOX2O60902 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.1■□□□□ 0.49
SHOX2O60902 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 AC132872.4-202ENST00000622924 2756 ntBASIC18.1■□□□□ 0.49
SHOX2O60902 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.1■□□□□ 0.49
SHOX2O60902 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHOX2O60902 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.1■□□□□ 0.49
SHOX2O60902 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SHOX2O60902 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.09■□□□□ 0.49
SHOX2O60902 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms