Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA1Q9Y5H4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.03■■□□□ 1.44
PCDHGA1Q9Y5H4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.03■■□□□ 1.44
PCDHGA1Q9Y5H4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA1Q9Y5H4 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA1Q9Y5H4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC24.03■■□□□ 1.44
PCDHGA1Q9Y5H4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
PCDHGA1Q9Y5H4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHGA1Q9Y5H4 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHGA1Q9Y5H4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHGA1Q9Y5H4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDHGA1Q9Y5H4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDHGA1Q9Y5H4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC24.02■■□□□ 1.44
PCDHGA1Q9Y5H4 AC103834.1-201ENST00000520383 144 ntBASIC24.02■■□□□ 1.44
PCDHGA1Q9Y5H4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHGA1Q9Y5H4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC24.01■■□□□ 1.43
PCDHGA1Q9Y5H4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHGA1Q9Y5H4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.01■■□□□ 1.43
PCDHGA1Q9Y5H4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PCDHGA1Q9Y5H4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24■■□□□ 1.43
PCDHGA1Q9Y5H4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA1Q9Y5H4 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA1Q9Y5H4 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24■■□□□ 1.43
PCDHGA1Q9Y5H4 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24■■□□□ 1.43
PCDHGA1Q9Y5H4 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA1Q9Y5H4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA1Q9Y5H4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA1Q9Y5H4 MIR4508-201ENST00000584178 70 ntBASIC23.99■■□□□ 1.43
PCDHGA1Q9Y5H4 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA1Q9Y5H4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.99■■□□□ 1.43
PCDHGA1Q9Y5H4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHGA1Q9Y5H4 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHGA1Q9Y5H4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHGA1Q9Y5H4 AC019069.1-201ENST00000610008 1333 ntBASIC23.98■■□□□ 1.43
PCDHGA1Q9Y5H4 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
PCDHGA1Q9Y5H4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA1Q9Y5H4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.97■■□□□ 1.43
PCDHGA1Q9Y5H4 GUSBP5-201ENST00000418136 578 ntBASIC23.97■■□□□ 1.43
PCDHGA1Q9Y5H4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA1Q9Y5H4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.97■■□□□ 1.43
PCDHGA1Q9Y5H4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHGA1Q9Y5H4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHGA1Q9Y5H4 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.96■■□□□ 1.43
PCDHGA1Q9Y5H4 AC131212.1-201ENST00000613771 668 ntBASIC23.95■■□□□ 1.42
PCDHGA1Q9Y5H4 PVT1_1.1-201ENST00000615125 194 ntBASIC23.95■■□□□ 1.42
PCDHGA1Q9Y5H4 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA1Q9Y5H4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
PCDHGA1Q9Y5H4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.94■■□□□ 1.42
PCDHGA1Q9Y5H4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.94■■□□□ 1.42
PCDHGA1Q9Y5H4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA1Q9Y5H4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.94■■□□□ 1.42
PCDHGA1Q9Y5H4 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.94■■□□□ 1.42
PCDHGA1Q9Y5H4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA1Q9Y5H4 ST7-AS1-201ENST00000456775 1889 ntBASIC23.94■■□□□ 1.42
PCDHGA1Q9Y5H4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA1Q9Y5H4 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
PCDHGA1Q9Y5H4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
PCDHGA1Q9Y5H4 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.92■■□□□ 1.42
PCDHGA1Q9Y5H4 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHGA1Q9Y5H4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PCDHGA1Q9Y5H4 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PCDHGA1Q9Y5H4 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHGA1Q9Y5H4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA1Q9Y5H4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.91■■□□□ 1.42
PCDHGA1Q9Y5H4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC23.91■■□□□ 1.42
PCDHGA1Q9Y5H4 THA1P-201ENST00000590384 1145 ntBASIC23.91■■□□□ 1.42
PCDHGA1Q9Y5H4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.91■■□□□ 1.42
PCDHGA1Q9Y5H4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA1Q9Y5H4 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA1Q9Y5H4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA1Q9Y5H4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
PCDHGA1Q9Y5H4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
PCDHGA1Q9Y5H4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHGA1Q9Y5H4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
PCDHGA1Q9Y5H4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHGA1Q9Y5H4 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
PCDHGA1Q9Y5H4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHGA1Q9Y5H4 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHGA1Q9Y5H4 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA1Q9Y5H4 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA1Q9Y5H4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA1Q9Y5H4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.86■■□□□ 1.41
PCDHGA1Q9Y5H4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA1Q9Y5H4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA1Q9Y5H4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA1Q9Y5H4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA1Q9Y5H4 AL031848.2-201ENST00000607670 837 ntBASIC23.86■■□□□ 1.41
PCDHGA1Q9Y5H4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHGA1Q9Y5H4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
PCDHGA1Q9Y5H4 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.85■■□□□ 1.41
PCDHGA1Q9Y5H4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.85■■□□□ 1.41
PCDHGA1Q9Y5H4 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms