Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA4Q9Y5G9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA4Q9Y5G9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA4Q9Y5G9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA4Q9Y5G9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.16■■□□□ 1.46
PCDHGA4Q9Y5G9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.15■■□□□ 1.46
PCDHGA4Q9Y5G9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
PCDHGA4Q9Y5G9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHGA4Q9Y5G9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
PCDHGA4Q9Y5G9 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.15■■□□□ 1.46
PCDHGA4Q9Y5G9 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHGA4Q9Y5G9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.14■■□□□ 1.45
PCDHGA4Q9Y5G9 AL033527.3-201ENST00000566366 1196 ntBASIC24.14■■□□□ 1.45
PCDHGA4Q9Y5G9 AC018358.1-201ENST00000631079 1402 ntBASIC24.14■■□□□ 1.45
PCDHGA4Q9Y5G9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
PCDHGA4Q9Y5G9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHGA4Q9Y5G9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHGA4Q9Y5G9 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
PCDHGA4Q9Y5G9 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
PCDHGA4Q9Y5G9 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHGA4Q9Y5G9 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHGA4Q9Y5G9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.12■■□□□ 1.45
PCDHGA4Q9Y5G9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHGA4Q9Y5G9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
PCDHGA4Q9Y5G9 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA4Q9Y5G9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA4Q9Y5G9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
PCDHGA4Q9Y5G9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHGA4Q9Y5G9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA4Q9Y5G9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHGA4Q9Y5G9 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHGA4Q9Y5G9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHGA4Q9Y5G9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 U85056.1-201ENST00000616429 682 ntBASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC24.09■■□□□ 1.45
PCDHGA4Q9Y5G9 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
PCDHGA4Q9Y5G9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHGA4Q9Y5G9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHGA4Q9Y5G9 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
PCDHGA4Q9Y5G9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA4Q9Y5G9 AC060814.1-201ENST00000554326 538 ntBASIC24.07■■□□□ 1.44
PCDHGA4Q9Y5G9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA4Q9Y5G9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC24.07■■□□□ 1.44
PCDHGA4Q9Y5G9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.06■■□□□ 1.44
PCDHGA4Q9Y5G9 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.06■■□□□ 1.44
PCDHGA4Q9Y5G9 LINC01003-201ENST00000564834 1764 ntBASIC24.06■■□□□ 1.44
PCDHGA4Q9Y5G9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA4Q9Y5G9 AC148477.6-201ENST00000623746 465 ntBASIC24.06■■□□□ 1.44
PCDHGA4Q9Y5G9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
PCDHGA4Q9Y5G9 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA4Q9Y5G9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA4Q9Y5G9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA4Q9Y5G9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA4Q9Y5G9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA4Q9Y5G9 BX255925.1-201ENST00000566954 1854 ntBASIC24.03■■□□□ 1.44
PCDHGA4Q9Y5G9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA4Q9Y5G9 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.02■■□□□ 1.44
PCDHGA4Q9Y5G9 MIR219A2-201ENST00000608502 1504 ntBASIC24.01■■□□□ 1.43
PCDHGA4Q9Y5G9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC24.01■■□□□ 1.43
PCDHGA4Q9Y5G9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHGA4Q9Y5G9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA4Q9Y5G9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA4Q9Y5G9 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC24■■□□□ 1.43
PCDHGA4Q9Y5G9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA4Q9Y5G9 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
PCDHGA4Q9Y5G9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA4Q9Y5G9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHGA4Q9Y5G9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.99■■□□□ 1.43
PCDHGA4Q9Y5G9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA4Q9Y5G9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
PCDHGA4Q9Y5G9 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA4Q9Y5G9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHGA4Q9Y5G9 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
PCDHGA4Q9Y5G9 TSPY13P-201ENST00000338964 914 ntBASIC23.98■■□□□ 1.43
PCDHGA4Q9Y5G9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHGA4Q9Y5G9 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.98■■□□□ 1.43
PCDHGA4Q9Y5G9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHGA4Q9Y5G9 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
PCDHGA4Q9Y5G9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms