Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.22■■■□□ 2.59
USP44Q9H0E7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.22■■■□□ 2.59
USP44Q9H0E7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.22■■■□□ 2.59
USP44Q9H0E7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP44Q9H0E7 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP44Q9H0E7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.21■■■□□ 2.59
USP44Q9H0E7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP44Q9H0E7 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP44Q9H0E7 AL449106.1-201ENST00000608517 1980 ntBASIC31.21■■■□□ 2.59
USP44Q9H0E7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
USP44Q9H0E7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
USP44Q9H0E7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
USP44Q9H0E7 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
USP44Q9H0E7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.58
USP44Q9H0E7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
USP44Q9H0E7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
USP44Q9H0E7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
USP44Q9H0E7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP44Q9H0E7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.19■■■□□ 2.58
USP44Q9H0E7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
USP44Q9H0E7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
USP44Q9H0E7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.18■■■□□ 2.58
USP44Q9H0E7 RARRES2P2-201ENST00000394842 485 ntBASIC31.17■■■□□ 2.58
USP44Q9H0E7 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP44Q9H0E7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP44Q9H0E7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.16■■■□□ 2.58
USP44Q9H0E7 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.16■■■□□ 2.58
USP44Q9H0E7 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP44Q9H0E7 ECEL1P2-201ENST00000461596 1295 ntBASIC31.15■■■□□ 2.58
USP44Q9H0E7 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
USP44Q9H0E7 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
USP44Q9H0E7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
USP44Q9H0E7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
USP44Q9H0E7 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP44Q9H0E7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.13■■■□□ 2.57
USP44Q9H0E7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.13■■■□□ 2.57
USP44Q9H0E7 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.12■■■□□ 2.57
USP44Q9H0E7 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP44Q9H0E7 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC31.12■■■□□ 2.57
USP44Q9H0E7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
USP44Q9H0E7 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP44Q9H0E7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
USP44Q9H0E7 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
USP44Q9H0E7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP44Q9H0E7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP44Q9H0E7 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.08■■■□□ 2.57
USP44Q9H0E7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP44Q9H0E7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP44Q9H0E7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.07■■■□□ 2.57
USP44Q9H0E7 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.07■■■□□ 2.56
USP44Q9H0E7 AL359504.2-201ENST00000605506 1601 ntBASIC31.07■■■□□ 2.56
USP44Q9H0E7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP44Q9H0E7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.07■■■□□ 2.56
USP44Q9H0E7 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP44Q9H0E7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP44Q9H0E7 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.06■■■□□ 2.56
USP44Q9H0E7 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.06■■■□□ 2.56
USP44Q9H0E7 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
USP44Q9H0E7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP44Q9H0E7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.05■■■□□ 2.56
USP44Q9H0E7 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USP44Q9H0E7 AC025884.2-201ENST00000553429 711 ntBASIC31.05■■■□□ 2.56
USP44Q9H0E7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.05■■■□□ 2.56
USP44Q9H0E7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP44Q9H0E7 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
USP44Q9H0E7 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.04■■■□□ 2.56
USP44Q9H0E7 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.04■■■□□ 2.56
USP44Q9H0E7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
USP44Q9H0E7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP44Q9H0E7 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC31.04■■■□□ 2.56
USP44Q9H0E7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP44Q9H0E7 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP44Q9H0E7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.03■■■□□ 2.56
USP44Q9H0E7 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP44Q9H0E7 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP44Q9H0E7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP44Q9H0E7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
USP44Q9H0E7 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
USP44Q9H0E7 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
USP44Q9H0E7 SMPD5-203ENST00000639008 1464 ntBASIC31.01■■■□□ 2.55
USP44Q9H0E7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
USP44Q9H0E7 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31■■■□□ 2.55
USP44Q9H0E7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC31■■■□□ 2.55
USP44Q9H0E7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
USP44Q9H0E7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
USP44Q9H0E7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.99■■■□□ 2.55
USP44Q9H0E7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC30.98■■■□□ 2.55
USP44Q9H0E7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
USP44Q9H0E7 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC30.98■■■□□ 2.55
USP44Q9H0E7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
USP44Q9H0E7 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
USP44Q9H0E7 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
USP44Q9H0E7 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
USP44Q9H0E7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC30.96■■■□□ 2.55
USP44Q9H0E7 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC30.96■■■□□ 2.55
USP44Q9H0E7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
USP44Q9H0E7 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
USP44Q9H0E7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
USP44Q9H0E7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
USP44Q9H0E7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms