Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
FOXC2Q99958 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.1■□□□□ 0.97
FOXC2Q99958 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.1■□□□□ 0.97
FOXC2Q99958 AC008406.3-201ENST00000620001 1374 ntBASIC21.1■□□□□ 0.97
FOXC2Q99958 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
FOXC2Q99958 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.09■□□□□ 0.97
FOXC2Q99958 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXC2Q99958 MIR3960-201ENST00000583311 91 ntBASIC21.09■□□□□ 0.97
FOXC2Q99958 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
FOXC2Q99958 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXC2Q99958 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
FOXC2Q99958 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
FOXC2Q99958 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.08■□□□□ 0.97
FOXC2Q99958 AC103724.3-201ENST00000564481 992 ntBASIC21.08■□□□□ 0.97
FOXC2Q99958 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXC2Q99958 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
FOXC2Q99958 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
FOXC2Q99958 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXC2Q99958 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
FOXC2Q99958 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.07■□□□□ 0.96
FOXC2Q99958 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXC2Q99958 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
FOXC2Q99958 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
FOXC2Q99958 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXC2Q99958 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXC2Q99958 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXC2Q99958 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXC2Q99958 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.06■□□□□ 0.96
FOXC2Q99958 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.06■□□□□ 0.96
FOXC2Q99958 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXC2Q99958 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXC2Q99958 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXC2Q99958 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXC2Q99958 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
FOXC2Q99958 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.05■□□□□ 0.96
FOXC2Q99958 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXC2Q99958 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
FOXC2Q99958 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXC2Q99958 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXC2Q99958 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXC2Q99958 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.04■□□□□ 0.96
FOXC2Q99958 AL135925.1-201ENST00000605920 1701 ntBASIC21.04■□□□□ 0.96
FOXC2Q99958 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
FOXC2Q99958 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXC2Q99958 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXC2Q99958 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.02■□□□□ 0.96
FOXC2Q99958 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
FOXC2Q99958 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
FOXC2Q99958 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXC2Q99958 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
FOXC2Q99958 AC239859.2-201ENST00000444165 318 ntBASIC21.01■□□□□ 0.95
FOXC2Q99958 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXC2Q99958 Z92544.1-202ENST00000571933 1220 ntBASIC21.01■□□□□ 0.95
FOXC2Q99958 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXC2Q99958 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXC2Q99958 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
FOXC2Q99958 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXC2Q99958 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXC2Q99958 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.99■□□□□ 0.95
FOXC2Q99958 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
FOXC2Q99958 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXC2Q99958 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXC2Q99958 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXC2Q99958 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXC2Q99958 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
FOXC2Q99958 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
FOXC2Q99958 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXC2Q99958 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.97■□□□□ 0.95
FOXC2Q99958 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXC2Q99958 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXC2Q99958 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXC2Q99958 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXC2Q99958 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
FOXC2Q99958 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXC2Q99958 AC019171.1-201ENST00000601251 1056 ntBASIC20.96■□□□□ 0.95
FOXC2Q99958 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
FOXC2Q99958 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.95■□□□□ 0.94
FOXC2Q99958 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXC2Q99958 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.95■□□□□ 0.94
FOXC2Q99958 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
FOXC2Q99958 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXC2Q99958 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.94■□□□□ 0.94
FOXC2Q99958 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.94■□□□□ 0.94
FOXC2Q99958 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.94■□□□□ 0.94
FOXC2Q99958 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
FOXC2Q99958 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXC2Q99958 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXC2Q99958 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXC2Q99958 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXC2Q99958 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXC2Q99958 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.93■□□□□ 0.94
FOXC2Q99958 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.93■□□□□ 0.94
FOXC2Q99958 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXC2Q99958 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.93■□□□□ 0.94
FOXC2Q99958 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXC2Q99958 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
FOXC2Q99958 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXC2Q99958 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.92■□□□□ 0.94
FOXC2Q99958 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
FOXC2Q99958 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms