Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 AC026202.3-201ENST00000600805 1127 ntBASIC7.54□□□□□ -1.2
SYNE1Q8NF91 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC7.54□□□□□ -1.2
SYNE1Q8NF91 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 AL359258.2-201ENST00000564063 1566 ntBASIC7.53□□□□□ -1.2
SYNE1Q8NF91 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
SYNE1Q8NF91 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC7.52□□□□□ -1.2
SYNE1Q8NF91 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 ECEL1P2-201ENST00000461596 1295 ntBASIC7.52□□□□□ -1.21
SYNE1Q8NF91 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 AC009831.1-201ENST00000580420 1582 ntBASIC7.52□□□□□ -1.21
SYNE1Q8NF91 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 AC010980.1-201ENST00000587192 1142 ntBASIC7.52□□□□□ -1.21
SYNE1Q8NF91 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 PFN2-211ENST00000489155 636 ntTSL 4 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 SMPD5-203ENST00000639008 1464 ntBASIC7.52□□□□□ -1.21
SYNE1Q8NF91 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE1Q8NF91 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 REST-210ENST00000638187 1334 ntTSL 5 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 KRT8P33-201ENST00000508125 1423 ntBASIC7.51□□□□□ -1.21
SYNE1Q8NF91 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC7.51□□□□□ -1.21
SYNE1Q8NF91 AC103834.1-201ENST00000520383 144 ntBASIC7.5□□□□□ -1.21
SYNE1Q8NF91 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
SYNE1Q8NF91 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
SYNE1Q8NF91 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
SYNE1Q8NF91 DUX4L18-201ENST00000553347 1267 ntBASIC7.49□□□□□ -1.21
SYNE1Q8NF91 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC7.49□□□□□ -1.21
SYNE1Q8NF91 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
SYNE1Q8NF91 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
SYNE1Q8NF91 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
SYNE1Q8NF91 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms