Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL28A1Q2UY09 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL28A1Q2UY09 AC103834.1-201ENST00000520383 144 ntBASIC23.75■■□□□ 1.39
COL28A1Q2UY09 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.75■■□□□ 1.39
COL28A1Q2UY09 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.75■■□□□ 1.39
COL28A1Q2UY09 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.75■■□□□ 1.39
COL28A1Q2UY09 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.74■■□□□ 1.39
COL28A1Q2UY09 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL28A1Q2UY09 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.73■■□□□ 1.39
COL28A1Q2UY09 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.73■■□□□ 1.39
COL28A1Q2UY09 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.73■■□□□ 1.39
COL28A1Q2UY09 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL28A1Q2UY09 AC135983.2-203ENST00000454486 1613 ntBASIC23.73■■□□□ 1.39
COL28A1Q2UY09 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL28A1Q2UY09 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
COL28A1Q2UY09 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL28A1Q2UY09 AC139795.1-202ENST00000500444 432 ntBASIC23.71■■□□□ 1.39
COL28A1Q2UY09 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL28A1Q2UY09 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL28A1Q2UY09 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
COL28A1Q2UY09 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL28A1Q2UY09 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL28A1Q2UY09 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.7■■□□□ 1.38
COL28A1Q2UY09 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL28A1Q2UY09 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL28A1Q2UY09 ABCB10P3-201ENST00000561950 2166 ntBASIC23.68■■□□□ 1.38
COL28A1Q2UY09 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
COL28A1Q2UY09 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL28A1Q2UY09 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.68■■□□□ 1.38
COL28A1Q2UY09 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.67■■□□□ 1.38
COL28A1Q2UY09 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL28A1Q2UY09 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.67■■□□□ 1.38
COL28A1Q2UY09 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
COL28A1Q2UY09 AC026202.3-201ENST00000600805 1127 ntBASIC23.67■■□□□ 1.38
COL28A1Q2UY09 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.66■■□□□ 1.38
COL28A1Q2UY09 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.66■■□□□ 1.38
COL28A1Q2UY09 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL28A1Q2UY09 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.65■■□□□ 1.38
COL28A1Q2UY09 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL28A1Q2UY09 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.65■■□□□ 1.38
COL28A1Q2UY09 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL28A1Q2UY09 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
COL28A1Q2UY09 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL28A1Q2UY09 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
COL28A1Q2UY09 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.64■■□□□ 1.37
COL28A1Q2UY09 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL28A1Q2UY09 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
COL28A1Q2UY09 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
COL28A1Q2UY09 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
COL28A1Q2UY09 AL139393.2-201ENST00000608721 2025 ntBASIC23.63■■□□□ 1.37
COL28A1Q2UY09 PVT1_1.1-201ENST00000615125 194 ntBASIC23.63■■□□□ 1.37
COL28A1Q2UY09 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL28A1Q2UY09 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
COL28A1Q2UY09 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL28A1Q2UY09 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
COL28A1Q2UY09 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL28A1Q2UY09 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL28A1Q2UY09 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
COL28A1Q2UY09 SMPD5-203ENST00000639008 1464 ntBASIC23.61■■□□□ 1.37
COL28A1Q2UY09 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
COL28A1Q2UY09 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL28A1Q2UY09 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
COL28A1Q2UY09 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL28A1Q2UY09 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL28A1Q2UY09 SPCS2P3-201ENST00000500401 656 ntBASIC23.6■■□□□ 1.37
COL28A1Q2UY09 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.6■■□□□ 1.37
COL28A1Q2UY09 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
COL28A1Q2UY09 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL28A1Q2UY09 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL28A1Q2UY09 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
COL28A1Q2UY09 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
COL28A1Q2UY09 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL28A1Q2UY09 MIR638-201ENST00000385237 100 ntBASIC23.58■■□□□ 1.37
COL28A1Q2UY09 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.58■■□□□ 1.37
COL28A1Q2UY09 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms