Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
LIMS3P0CW19 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22■■□□□ 1.11
LIMS3P0CW19 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LIMS3P0CW19 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LIMS3P0CW19 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.99■■□□□ 1.11
LIMS3P0CW19 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
LIMS3P0CW19 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LIMS3P0CW19 AC005559.1-201ENST00000589661 871 ntBASIC21.98■■□□□ 1.11
LIMS3P0CW19 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
LIMS3P0CW19 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.98■■□□□ 1.11
LIMS3P0CW19 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.97■■□□□ 1.11
LIMS3P0CW19 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LIMS3P0CW19 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
LIMS3P0CW19 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.97■■□□□ 1.11
LIMS3P0CW19 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
LIMS3P0CW19 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.96■■□□□ 1.11
LIMS3P0CW19 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.96■■□□□ 1.11
LIMS3P0CW19 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIMS3P0CW19 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIMS3P0CW19 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIMS3P0CW19 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIMS3P0CW19 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LIMS3P0CW19 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LIMS3P0CW19 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMS3P0CW19 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMS3P0CW19 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LIMS3P0CW19 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.95■■□□□ 1.1
LIMS3P0CW19 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
LIMS3P0CW19 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
LIMS3P0CW19 ERN1-208ENST00000606895 2068 ntBASIC21.94■■□□□ 1.1
LIMS3P0CW19 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.92■■□□□ 1.1
LIMS3P0CW19 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LIMS3P0CW19 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
LIMS3P0CW19 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.92■■□□□ 1.1
LIMS3P0CW19 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.92■■□□□ 1.1
LIMS3P0CW19 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LIMS3P0CW19 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LIMS3P0CW19 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LIMS3P0CW19 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
LIMS3P0CW19 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
LIMS3P0CW19 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LIMS3P0CW19 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.9■■□□□ 1.1
LIMS3P0CW19 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.1
LIMS3P0CW19 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
LIMS3P0CW19 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LIMS3P0CW19 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
LIMS3P0CW19 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
LIMS3P0CW19 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
LIMS3P0CW19 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
LIMS3P0CW19 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LIMS3P0CW19 WHAMMP3-201ENST00000611636 1609 ntBASIC21.88■■□□□ 1.09
LIMS3P0CW19 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.88■■□□□ 1.09
LIMS3P0CW19 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIMS3P0CW19 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.88■■□□□ 1.09
LIMS3P0CW19 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.88■■□□□ 1.09
LIMS3P0CW19 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
LIMS3P0CW19 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.87■■□□□ 1.09
LIMS3P0CW19 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
LIMS3P0CW19 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMS3P0CW19 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
LIMS3P0CW19 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LIMS3P0CW19 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIMS3P0CW19 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LIMS3P0CW19 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.86■■□□□ 1.09
LIMS3P0CW19 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
LIMS3P0CW19 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIMS3P0CW19 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIMS3P0CW19 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.86■■□□□ 1.09
LIMS3P0CW19 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIMS3P0CW19 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
LIMS3P0CW19 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LIMS3P0CW19 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LIMS3P0CW19 SUZ12P1-203ENST00000578195 985 ntBASIC21.85■■□□□ 1.09
LIMS3P0CW19 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LIMS3P0CW19 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LIMS3P0CW19 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.84■■□□□ 1.09
LIMS3P0CW19 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.84■■□□□ 1.09
LIMS3P0CW19 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LIMS3P0CW19 AC010501.1-201ENST00000606270 1962 ntBASIC21.84■■□□□ 1.09
LIMS3P0CW19 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LIMS3P0CW19 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LIMS3P0CW19 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.83■■□□□ 1.09
LIMS3P0CW19 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
LIMS3P0CW19 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMS3P0CW19 AC110285.7-201ENST00000624417 1536 ntBASIC21.82■■□□□ 1.08
LIMS3P0CW19 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMS3P0CW19 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMS3P0CW19 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.82■■□□□ 1.08
LIMS3P0CW19 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMS3P0CW19 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMS3P0CW19 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMS3P0CW19 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
LIMS3P0CW19 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.81■■□□□ 1.08
LIMS3P0CW19 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.81■■□□□ 1.08
LIMS3P0CW19 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMS3P0CW19 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.81■■□□□ 1.08
LIMS3P0CW19 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMS3P0CW19 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIMS3P0CW19 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.8■■□□□ 1.08
LIMS3P0CW19 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms