Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC100797.4-201ENST00000631653 1827 ntBASIC18.5■□□□□ 0.55
HLA-DQA1P01909 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DQA1P01909 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DQA1P01909 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DQA1P01909 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DQA1P01909 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 WASH5P-204ENST00000632292 975 ntBASIC18.49■□□□□ 0.55
HLA-DQA1P01909 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DQA1P01909 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DQA1P01909 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.48■□□□□ 0.55
HLA-DQA1P01909 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DQA1P01909 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.47■□□□□ 0.55
HLA-DQA1P01909 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DQA1P01909 LINC00543-201ENST00000567234 1845 ntBASIC18.47■□□□□ 0.55
HLA-DQA1P01909 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
HLA-DQA1P01909 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.47■□□□□ 0.55
HLA-DQA1P01909 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DQA1P01909 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC18.46■□□□□ 0.55
HLA-DQA1P01909 AC142381.3-201ENST00000568208 1670 ntBASIC18.46■□□□□ 0.55
HLA-DQA1P01909 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DQA1P01909 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DQA1P01909 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DQA1P01909 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.46■□□□□ 0.54
HLA-DQA1P01909 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HLA-DQA1P01909 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DQA1P01909 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
HLA-DQA1P01909 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.44■□□□□ 0.54
HLA-DQA1P01909 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DQA1P01909 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HLA-DQA1P01909 AC018358.1-201ENST00000631079 1402 ntBASIC18.43■□□□□ 0.54
HLA-DQA1P01909 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DQA1P01909 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
HLA-DQA1P01909 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DQA1P01909 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DQA1P01909 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HLA-DQA1P01909 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
HLA-DQA1P01909 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DQA1P01909 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DQA1P01909 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HLA-DQA1P01909 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DQA1P01909 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
HLA-DQA1P01909 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.41■□□□□ 0.54
HLA-DQA1P01909 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DQA1P01909 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HLA-DQA1P01909 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DQA1P01909 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.41■□□□□ 0.54
HLA-DQA1P01909 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DQA1P01909 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HLA-DQA1P01909 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DQA1P01909 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DQA1P01909 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DQA1P01909 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DQA1P01909 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DQA1P01909 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
HLA-DQA1P01909 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DQA1P01909 AC127502.1-201ENST00000399971 1502 ntBASIC18.39■□□□□ 0.54
HLA-DQA1P01909 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DQA1P01909 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DQA1P01909 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DQA1P01909 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.39■□□□□ 0.53
HLA-DQA1P01909 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DQA1P01909 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DQA1P01909 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DQA1P01909 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DQA1P01909 AL139125.2-201ENST00000623134 1869 ntBASIC18.37■□□□□ 0.53
HLA-DQA1P01909 AC079834.2-201ENST00000609776 1949 ntBASIC18.37■□□□□ 0.53
HLA-DQA1P01909 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms