Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TRIM13O60858 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRIM13O60858 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TRIM13O60858 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRIM13O60858 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRIM13O60858 WHAMMP3-201ENST00000611636 1609 ntBASIC24.27■■□□□ 1.48
TRIM13O60858 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRIM13O60858 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.26■■□□□ 1.47
TRIM13O60858 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
TRIM13O60858 AC087741.3-201ENST00000624270 1347 ntBASIC24.26■■□□□ 1.47
TRIM13O60858 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
TRIM13O60858 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
TRIM13O60858 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRIM13O60858 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRIM13O60858 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRIM13O60858 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
TRIM13O60858 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
TRIM13O60858 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
TRIM13O60858 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.24■■□□□ 1.47
TRIM13O60858 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
TRIM13O60858 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
TRIM13O60858 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
TRIM13O60858 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.23■■□□□ 1.47
TRIM13O60858 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
TRIM13O60858 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
TRIM13O60858 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.22■■□□□ 1.47
TRIM13O60858 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
TRIM13O60858 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
TRIM13O60858 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
TRIM13O60858 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.21■■□□□ 1.47
TRIM13O60858 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
TRIM13O60858 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
TRIM13O60858 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC24.21■■□□□ 1.47
TRIM13O60858 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRIM13O60858 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.2■■□□□ 1.46
TRIM13O60858 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRIM13O60858 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRIM13O60858 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRIM13O60858 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
TRIM13O60858 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TRIM13O60858 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.19■■□□□ 1.46
TRIM13O60858 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.19■■□□□ 1.46
TRIM13O60858 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
TRIM13O60858 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
TRIM13O60858 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM13O60858 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM13O60858 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TRIM13O60858 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.17■■□□□ 1.46
TRIM13O60858 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
TRIM13O60858 AC044849.2-201ENST00000606596 710 ntBASIC24.16■■□□□ 1.46
TRIM13O60858 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
TRIM13O60858 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.16■■□□□ 1.46
TRIM13O60858 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
TRIM13O60858 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM13O60858 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TRIM13O60858 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC24.15■■□□□ 1.46
TRIM13O60858 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
TRIM13O60858 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
TRIM13O60858 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
TRIM13O60858 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.14■■□□□ 1.46
TRIM13O60858 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM13O60858 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM13O60858 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.14■■□□□ 1.45
TRIM13O60858 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.14■■□□□ 1.45
TRIM13O60858 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM13O60858 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM13O60858 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
TRIM13O60858 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM13O60858 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
TRIM13O60858 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.13■■□□□ 1.45
TRIM13O60858 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TRIM13O60858 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
TRIM13O60858 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TRIM13O60858 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.12■■□□□ 1.45
TRIM13O60858 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TRIM13O60858 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.12■■□□□ 1.45
TRIM13O60858 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
TRIM13O60858 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM13O60858 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM13O60858 AL162393.1-201ENST00000437852 946 ntBASIC24.11■■□□□ 1.45
TRIM13O60858 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24.11■■□□□ 1.45
TRIM13O60858 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM13O60858 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TRIM13O60858 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TRIM13O60858 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
TRIM13O60858 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.1■■□□□ 1.45
TRIM13O60858 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
TRIM13O60858 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.1■■□□□ 1.45
TRIM13O60858 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TRIM13O60858 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TRIM13O60858 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC24.1■■□□□ 1.45
TRIM13O60858 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms