Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SOX1O00570 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SOX1O00570 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SOX1O00570 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SOX1O00570 AC005837.3-201ENST00000612163 286 ntBASIC27.12■■□□□ 1.93
SOX1O00570 MTX2-204ENST00000443241 799 ntTSL 3 BASIC27.11■■□□□ 1.93
SOX1O00570 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC27.11■■□□□ 1.93
SOX1O00570 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.11■■□□□ 1.93
SOX1O00570 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SOX1O00570 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SOX1O00570 AL359258.2-201ENST00000564063 1566 ntBASIC27.1■■□□□ 1.93
SOX1O00570 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC27.1■■□□□ 1.93
SOX1O00570 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SOX1O00570 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC27.1■■□□□ 1.93
SOX1O00570 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.1■■□□□ 1.93
SOX1O00570 LONRF2P2-201ENST00000439212 571 ntBASIC27.1■■□□□ 1.93
SOX1O00570 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SOX1O00570 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SOX1O00570 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
SOX1O00570 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC27.09■■□□□ 1.93
SOX1O00570 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
SOX1O00570 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC27.09■■□□□ 1.93
SOX1O00570 AC110285.6-201ENST00000617652 491 ntBASIC27.09■■□□□ 1.93
SOX1O00570 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
SOX1O00570 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SOX1O00570 KRT16P3-201ENST00000439127 1283 ntBASIC27.08■■□□□ 1.93
SOX1O00570 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.08■■□□□ 1.93
SOX1O00570 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SOX1O00570 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC27.07■■□□□ 1.92
SOX1O00570 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
SOX1O00570 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.07■■□□□ 1.92
SOX1O00570 MIR4787-201ENST00000607364 84 ntBASIC27.07■■□□□ 1.92
SOX1O00570 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.06■■□□□ 1.92
SOX1O00570 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
SOX1O00570 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC27.06■■□□□ 1.92
SOX1O00570 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SOX1O00570 TRIR-202ENST00000588213 841 ntTSL 3 BASIC27.06■■□□□ 1.92
SOX1O00570 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SOX1O00570 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SOX1O00570 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC27.05■■□□□ 1.92
SOX1O00570 AC131281.2-201ENST00000520478 145 ntBASIC27.05■■□□□ 1.92
SOX1O00570 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SOX1O00570 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SOX1O00570 GUK1-205ENST00000366722 850 ntTSL 3 BASIC27.04■■□□□ 1.92
SOX1O00570 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SOX1O00570 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC27.04■■□□□ 1.92
SOX1O00570 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
SOX1O00570 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SOX1O00570 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC27.04■■□□□ 1.92
SOX1O00570 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
SOX1O00570 AC104564.3-201ENST00000582367 638 ntBASIC27.03■■□□□ 1.92
SOX1O00570 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SOX1O00570 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SOX1O00570 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
SOX1O00570 KRT125P-201ENST00000546827 989 ntBASIC27.02■■□□□ 1.92
SOX1O00570 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SOX1O00570 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
SOX1O00570 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC27.01■■□□□ 1.91
SOX1O00570 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
SOX1O00570 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
SOX1O00570 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC27■■□□□ 1.91
SOX1O00570 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
SOX1O00570 AC026271.2-201ENST00000428091 497 ntBASIC27■■□□□ 1.91
SOX1O00570 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC27■■□□□ 1.91
SOX1O00570 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC27■■□□□ 1.91
SOX1O00570 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC27■■□□□ 1.91
SOX1O00570 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC27■■□□□ 1.91
SOX1O00570 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
SOX1O00570 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.99■■□□□ 1.91
SOX1O00570 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
SOX1O00570 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.99■■□□□ 1.91
SOX1O00570 ZNRF2P3-201ENST00000424200 374 ntBASIC26.98■■□□□ 1.91
SOX1O00570 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SOX1O00570 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.98■■□□□ 1.91
SOX1O00570 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SOX1O00570 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
SOX1O00570 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SOX1O00570 AL136116.3-201ENST00000402907 1138 ntBASIC26.97■■□□□ 1.91
SOX1O00570 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.97■■□□□ 1.91
SOX1O00570 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SOX1O00570 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SOX1O00570 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
SOX1O00570 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SOX1O00570 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.96■■□□□ 1.91
SOX1O00570 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
SOX1O00570 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SOX1O00570 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
SOX1O00570 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SOX1O00570 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.95■■□□□ 1.9
SOX1O00570 AC019171.1-201ENST00000601251 1056 ntBASIC26.95■■□□□ 1.9
SOX1O00570 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.95■■□□□ 1.9
SOX1O00570 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.95■■□□□ 1.9
SOX1O00570 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
SOX1O00570 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.94■■□□□ 1.9
SOX1O00570 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.94■■□□□ 1.9
SOX1O00570 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.94■■□□□ 1.9
SOX1O00570 MIR3960-201ENST00000583311 91 ntBASIC26.94■■□□□ 1.9
SOX1O00570 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.94■■□□□ 1.9
SOX1O00570 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SOX1O00570 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.93■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms