Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
SMIM28A0A1B0GU29 AC025884.2-201ENST00000553429 711 ntBASIC26.8■■□□□ 1.88
SMIM28A0A1B0GU29 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
SMIM28A0A1B0GU29 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SMIM28A0A1B0GU29 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.79■■□□□ 1.88
SMIM28A0A1B0GU29 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
SMIM28A0A1B0GU29 LINC01003-201ENST00000564834 1764 ntBASIC26.79■■□□□ 1.88
SMIM28A0A1B0GU29 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.78■■□□□ 1.88
SMIM28A0A1B0GU29 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.78■■□□□ 1.88
SMIM28A0A1B0GU29 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.78■■□□□ 1.88
SMIM28A0A1B0GU29 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.78■■□□□ 1.88
SMIM28A0A1B0GU29 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
SMIM28A0A1B0GU29 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SMIM28A0A1B0GU29 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.77■■□□□ 1.88
SMIM28A0A1B0GU29 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SMIM28A0A1B0GU29 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SMIM28A0A1B0GU29 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.88
SMIM28A0A1B0GU29 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SMIM28A0A1B0GU29 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.76■■□□□ 1.87
SMIM28A0A1B0GU29 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMIM28A0A1B0GU29 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
SMIM28A0A1B0GU29 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMIM28A0A1B0GU29 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.75■■□□□ 1.87
SMIM28A0A1B0GU29 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.75■■□□□ 1.87
SMIM28A0A1B0GU29 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.74■■□□□ 1.87
SMIM28A0A1B0GU29 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.74■■□□□ 1.87
SMIM28A0A1B0GU29 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMIM28A0A1B0GU29 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SMIM28A0A1B0GU29 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMIM28A0A1B0GU29 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMIM28A0A1B0GU29 AL359504.2-201ENST00000605506 1601 ntBASIC26.72■■□□□ 1.87
SMIM28A0A1B0GU29 KRT18P60-201ENST00000312876 1297 ntBASIC26.71■■□□□ 1.87
SMIM28A0A1B0GU29 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SMIM28A0A1B0GU29 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
SMIM28A0A1B0GU29 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SMIM28A0A1B0GU29 AC012354.3-201ENST00000623734 483 ntBASIC26.7■■□□□ 1.86
SMIM28A0A1B0GU29 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SMIM28A0A1B0GU29 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SMIM28A0A1B0GU29 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SMIM28A0A1B0GU29 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.7■■□□□ 1.86
SMIM28A0A1B0GU29 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMIM28A0A1B0GU29 AC009831.1-201ENST00000580420 1582 ntBASIC26.68■■□□□ 1.86
SMIM28A0A1B0GU29 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
SMIM28A0A1B0GU29 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.68■■□□□ 1.86
SMIM28A0A1B0GU29 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.68■■□□□ 1.86
SMIM28A0A1B0GU29 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC26.68■■□□□ 1.86
SMIM28A0A1B0GU29 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
SMIM28A0A1B0GU29 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.68■■□□□ 1.86
SMIM28A0A1B0GU29 RP9P-202ENST00000450133 1212 ntBASIC26.67■■□□□ 1.86
SMIM28A0A1B0GU29 AC026202.3-201ENST00000600805 1127 ntBASIC26.67■■□□□ 1.86
SMIM28A0A1B0GU29 AC133552.2-201ENST00000619106 1032 ntBASIC26.67■■□□□ 1.86
SMIM28A0A1B0GU29 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SMIM28A0A1B0GU29 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SMIM28A0A1B0GU29 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.66■■□□□ 1.86
SMIM28A0A1B0GU29 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.66■■□□□ 1.86
SMIM28A0A1B0GU29 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SMIM28A0A1B0GU29 AC142086.6-201ENST00000621154 1765 ntBASIC26.66■■□□□ 1.86
SMIM28A0A1B0GU29 BX255925.1-201ENST00000566954 1854 ntBASIC26.66■■□□□ 1.86
SMIM28A0A1B0GU29 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SMIM28A0A1B0GU29 AL449106.1-201ENST00000608517 1980 ntBASIC26.64■■□□□ 1.86
SMIM28A0A1B0GU29 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.86
SMIM28A0A1B0GU29 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC26.64■■□□□ 1.86
SMIM28A0A1B0GU29 AC093536.1-201ENST00000569153 554 ntBASIC26.64■■□□□ 1.86
SMIM28A0A1B0GU29 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.64■■□□□ 1.86
SMIM28A0A1B0GU29 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMIM28A0A1B0GU29 MIR3960-201ENST00000583311 91 ntBASIC26.63■■□□□ 1.85
SMIM28A0A1B0GU29 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.63■■□□□ 1.85
SMIM28A0A1B0GU29 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMIM28A0A1B0GU29 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SMIM28A0A1B0GU29 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMIM28A0A1B0GU29 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SMIM28A0A1B0GU29 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SMIM28A0A1B0GU29 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SMIM28A0A1B0GU29 AL592293.1-201ENST00000502889 1188 ntBASIC26.61■■□□□ 1.85
SMIM28A0A1B0GU29 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC26.61■■□□□ 1.85
SMIM28A0A1B0GU29 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.61■■□□□ 1.85
SMIM28A0A1B0GU29 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.6■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms