Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 CLEC4GP1-201ENST00000596555 870 ntBASIC18.91■□□□□ 0.62
USP3Q9Y6I4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.91■□□□□ 0.62
USP3Q9Y6I4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 NUS1P1-201ENST00000446295 882 ntBASIC18.9■□□□□ 0.62
USP3Q9Y6I4 KRT17P6-201ENST00000453795 1220 ntBASIC18.9■□□□□ 0.62
USP3Q9Y6I4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 AP000867.3-201ENST00000524675 377 ntBASIC18.9■□□□□ 0.62
USP3Q9Y6I4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.9■□□□□ 0.62
USP3Q9Y6I4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 MIR3652-201ENST00000579335 131 ntBASIC18.9■□□□□ 0.62
USP3Q9Y6I4 Z69720.1-201ENST00000601483 472 ntBASIC18.9■□□□□ 0.62
USP3Q9Y6I4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
USP3Q9Y6I4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
USP3Q9Y6I4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.89■□□□□ 0.62
USP3Q9Y6I4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
USP3Q9Y6I4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP3Q9Y6I4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 DUSP5P1-201ENST00000441325 1139 ntBASIC18.88■□□□□ 0.61
USP3Q9Y6I4 VENTXP7-201ENST00000475503 772 ntBASIC18.88■□□□□ 0.61
USP3Q9Y6I4 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 AC112698.1-201ENST00000510299 916 ntBASIC18.88■□□□□ 0.61
USP3Q9Y6I4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms