Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VSX1Q9NZR4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VSX1Q9NZR4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 ECEL1P2-202ENST00000465689 757 ntBASIC16.2■□□□□ 0.18
VSX1Q9NZR4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.2■□□□□ 0.18
VSX1Q9NZR4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 AC024243.1-201ENST00000609234 778 ntBASIC16.19■□□□□ 0.18
VSX1Q9NZR4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 KRT18P55-202ENST00000578578 1546 ntBASIC16.19■□□□□ 0.18
VSX1Q9NZR4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VSX1Q9NZR4 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.18■□□□□ 0.18
VSX1Q9NZR4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms