Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 AL354751.1-201ENST00000412768 1863 ntBASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 CLEC4GP1-201ENST00000596555 870 ntBASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 AL096828.2-201ENST00000567259 1965 ntBASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 MIR662-201ENST00000384847 95 ntBASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 AC069148.1-201ENST00000608741 768 ntBASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CUEDC1Q9NWM3 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.52■□□□□ 0.39
CUEDC1Q9NWM3 REXO1L9P-201ENST00000604264 2108 ntBASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 ABALON-201ENST00000629058 1903 ntBASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 AC007613.1-201ENST00000572811 2597 ntBASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.51■□□□□ 0.39
CUEDC1Q9NWM3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CUEDC1Q9NWM3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms