Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.03■□□□□ -0
VPS13CQ709C8 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.03■□□□□ -0
VPS13CQ709C8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.03■□□□□ -0
VPS13CQ709C8 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 AP002414.3-201ENST00000589352 1468 ntBASIC15.03■□□□□ -0
VPS13CQ709C8 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.03■□□□□ -0
VPS13CQ709C8 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.03■□□□□ -0
VPS13CQ709C8 AC012645.4-201ENST00000610691 1061 ntBASIC15.03■□□□□ -0
VPS13CQ709C8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.03■□□□□ -0
VPS13CQ709C8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS13CQ709C8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.03■□□□□ -0
VPS13CQ709C8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.03■□□□□ -0
VPS13CQ709C8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13CQ709C8 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13CQ709C8 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
VPS13CQ709C8 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13CQ709C8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
VPS13CQ709C8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13CQ709C8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS13CQ709C8 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS13CQ709C8 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.02□□□□□ -0.01
VPS13CQ709C8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.02□□□□□ -0.01
VPS13CQ709C8 AC068587.9-201ENST00000641814 219 ntBASIC15.02□□□□□ -0.01
VPS13CQ709C8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS13CQ709C8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13CQ709C8 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13CQ709C8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS13CQ709C8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13CQ709C8 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13CQ709C8 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
VPS13CQ709C8 OR7E47P-204ENST00000575924 449 ntBASIC15.02□□□□□ -0.01
VPS13CQ709C8 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.02□□□□□ -0.01
VPS13CQ709C8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS13CQ709C8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS13CQ709C8 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 AC254562.1-201ENST00000417586 456 ntBASIC15.01□□□□□ -0.01
VPS13CQ709C8 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 AL096865.1-201ENST00000606796 927 ntBASIC15.01□□□□□ -0.01
VPS13CQ709C8 AP000867.4-201ENST00000641616 219 ntBASIC15.01□□□□□ -0.01
VPS13CQ709C8 AC010460.3-201ENST00000511359 1579 ntBASIC15.01□□□□□ -0.01
VPS13CQ709C8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
VPS13CQ709C8 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15□□□□□ -0.01
VPS13CQ709C8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13CQ709C8 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13CQ709C8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VPS13CQ709C8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VPS13CQ709C8 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
VPS13CQ709C8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VPS13CQ709C8 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC15□□□□□ -0.01
VPS13CQ709C8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13CQ709C8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13CQ709C8 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS13CQ709C8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15□□□□□ -0.01
VPS13CQ709C8 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13CQ709C8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15□□□□□ -0.01
VPS13CQ709C8 AL078644.1-201ENST00000609881 752 ntBASIC15□□□□□ -0.01
VPS13CQ709C8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS13CQ709C8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15□□□□□ -0.01
VPS13CQ709C8 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15□□□□□ -0.01
VPS13CQ709C8 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms