Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 FUOM-202ENST00000368551 628 ntTSL 3 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 AC064836.3-201ENST00000607928 673 ntBASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 AC092865.6-201ENST00000642101 219 ntBASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CCDC88AQ3V6T2 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 AC099343.3-201ENST00000605834 2503 ntBASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 MTCL1P1-201ENST00000446207 792 ntBASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 MYLKP1-201ENST00000509077 1580 ntBASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 KRT18P28-201ENST00000453838 1332 ntBASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 CRYGEP-201ENST00000412192 528 ntBASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 HLA-J-203ENST00000494367 1087 ntBASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC88AQ3V6T2 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 AC093512.1-201ENST00000617969 520 ntBASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC88AQ3V6T2 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 LHX6-205ENST00000464484 666 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 AC239800.4-201ENST00000603712 296 ntBASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 AC009102.3-201ENST00000623118 1491 ntBASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 ASL-204ENST00000395331 1538 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms