Protein–RNA interactions for Protein: P56704

WNT3A, Protein Wnt-3a, humanhuman

Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
WNT3AP56704 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.33■□□□□ 0.52
WNT3AP56704 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 AC112907.2-201ENST00000448639 330 ntBASIC18.33■□□□□ 0.52
WNT3AP56704 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.33■□□□□ 0.52
WNT3AP56704 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.33■□□□□ 0.52
WNT3AP56704 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.33■□□□□ 0.52
WNT3AP56704 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
WNT3AP56704 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
WNT3AP56704 KRT89P-201ENST00000620027 1478 ntBASIC18.33■□□□□ 0.52
WNT3AP56704 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.33■□□□□ 0.52
WNT3AP56704 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 LINC00602-201ENST00000629776 2065 ntBASIC18.32■□□□□ 0.52
WNT3AP56704 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
WNT3AP56704 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
WNT3AP56704 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.32■□□□□ 0.52
WNT3AP56704 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.32■□□□□ 0.52
WNT3AP56704 AC113404.2-201ENST00000507884 177 ntBASIC18.32■□□□□ 0.52
WNT3AP56704 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.32■□□□□ 0.52
WNT3AP56704 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.32■□□□□ 0.52
WNT3AP56704 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.32■□□□□ 0.52
WNT3AP56704 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
WNT3AP56704 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
WNT3AP56704 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
WNT3AP56704 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
WNT3AP56704 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
WNT3AP56704 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.31■□□□□ 0.52
WNT3AP56704 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.31■□□□□ 0.52
WNT3AP56704 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.31■□□□□ 0.52
WNT3AP56704 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.31■□□□□ 0.52
WNT3AP56704 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
WNT3AP56704 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 KRT18P48-201ENST00000434763 852 ntBASIC18.31■□□□□ 0.52
WNT3AP56704 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.31■□□□□ 0.52
WNT3AP56704 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.31■□□□□ 0.52
WNT3AP56704 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.31■□□□□ 0.52
WNT3AP56704 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.31■□□□□ 0.52
WNT3AP56704 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.31■□□□□ 0.52
WNT3AP56704 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.31■□□□□ 0.52
WNT3AP56704 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
WNT3AP56704 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
WNT3AP56704 LINC01311-201ENST00000565162 1445 ntBASIC18.31■□□□□ 0.52
WNT3AP56704 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
WNT3AP56704 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
WNT3AP56704 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.3■□□□□ 0.52
WNT3AP56704 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.3■□□□□ 0.52
WNT3AP56704 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
WNT3AP56704 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
WNT3AP56704 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 MIR662-201ENST00000384847 95 ntBASIC18.3■□□□□ 0.52
WNT3AP56704 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
WNT3AP56704 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
WNT3AP56704 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.3■□□□□ 0.52
WNT3AP56704 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
WNT3AP56704 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 AC068880.1-201ENST00000507289 2297 ntBASIC18.3■□□□□ 0.52
WNT3AP56704 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.3■□□□□ 0.52
WNT3AP56704 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.3■□□□□ 0.52
WNT3AP56704 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
WNT3AP56704 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms